Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAATAAGGGATCTCCAAATTGCTGGTGATGCTCTTCCAGGACAGGAGCTCCAGGCATGTGGATACTCTATTAATGGAACAACCAGTTGTAACTTTGAGgtgtgcacaggatagaaactctctcgttgcttgtatctcacctactagtgaattttctggatgtgccttaaaatgcctgctatcagaaagtatttctgtaggatgtttatattccttatttaaatatttgtgttatatatttccactgccag

Basic information

species Vitis vinifera
transcript Vv07s0130g00420.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0130g00420.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: AT5G23510.1 (Arabidopsis thaliana), 5'ss of exon 2
AGCAATAAGGGATCTCCAAATTGCTGGTGATGCTCTTCCAGGACAGGAGCTCCAGGCATGTGGATACTCTATTAATGGAACAACCAGTTGTAACTTTGAGgtgtgcac-aggataga-aactctctcgttgcttgtatctcacctactagtgaattttctggatgtgccttaaaatgcctgctatcagaaagtatttctgtaggatgtttatattccttatttaaatatttgtgttatatatttccactgccag
|||  ||  | | ||||||||| | || ||  ||  ||| ||||| || || ||||| ||||| ||||| |||||||||||||| |||||||| ||||||||||| || |  | ||| |||    ||| | | | |  || || ||   ||  | || ||  || | | |        |   | ||||                                                                  
AGCTTTAGAGAACCTCCAAATTTCAGGAGAACCTTATCCTGGACATGAACTTCAGGCTTGTGGTTACTCCATTAATGGAACAACAAGTTGTAATTTTGAGgtgtgtactaaaacagacaacagaatcgcttccttt--cttacttat--gttgaattgctctatcttcttctgttcttccattttcag------------------------------------------------------------------

upper sequence: Vv07s0130g00420.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: AT5G23490.1 (Arabidopsis thaliana), 5'ss of exon 13
AGCAATAAGGGATCTCCAAATTGCTGGTGATGCTCTTCCAGGACAGGAGCTCCAGGCATGTGGATACTCTATTAATGGAACAACCAGTTGTAACTTTGAGgtgtgcacaggatagaaa-ctctctcgttgcttgtatctcacctactagtgaattttctggatgtgccttaaaatgcctgctatcagaaagtatttctgtaggatgtttatattccttatttaaatatttgtgttatatatttccactgccag
||  |||  ||| ||||||||| | || ||  ||  ||| ||||| || || ||||| ||||| ||||| |||||||||||||| |||||||| ||||||||| | ||   ||| ||| |    ||| | | | || || |  |   | || || |  |  || | | |        |   | ||||                                                                  
AGGTATAGAGGACCTCCAAATTTCAGGAGAACCTTATCCTGGACATGAACTTCAGGCTTGTGGTTACTCCATTAATGGAACAACAAGTTGTAATTTTGAGgtgcgtactaaataaaaaacagaatcgcttcct-ta-cttatgttgaattgcatctaatctatcttcttctgttcttcaattttcag------------------------------------------------------------------