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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAGGGAACTCGGTGTCTGTGATCAATCTTGTAAGATTGACCTCCATGGTTGCTGGCAGTTGGTTTGAGCGGCACAGGAGGAATGCAGAGCATCTTCTGgtgtgttttgtttcactgaaagtgttaatctgtcaaattgaatctgaatttgcaagaatccttgacttgtccccaatttctaatgatggtacag

Basic information

species Vitis vinifera
transcript Vv07s0104g01480.t01
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30255049|gb|CB971496.1|CB971496
EST:     TTGCTGGCAGTTGGTTTGAGCGGCACAGGAGGAATGCAGAGCATCTTCTG                         GCCGTTTTTGAGACGAGATTGAAAGATATGGCTATGGCAGTACCTCTGATG
genomic: TTGCTGGCAGTTGGTTTGAGCGGCACAGGAGGAATGCAGAGCATCTTCTGgtgtgttttg ... gatggtacagGCCGTTTTTGAGACGAGATTGAAAGATATGGCTATGGCAGTACCTCTGATG
EST: gi|110370590|gb|EC930089.1|EC930089
EST:     TTGCTGGCAGTTGGTTTGAGCGGCACAGGAGGAATGCAGAGCATCTTCTG                         GCCGTTTTTGAGACGAGATTGAAAGATATGGCTATGGCAGTACCTCTGATG
genomic: TTGCTGGCAGTTGGTTTGAGCGGCACAGGAGGAATGCAGAGCATCTTCTGgtgtgttttg ... gatggtacagGCCGTTTTTGAGACGAGATTGAAAGATATGGCTATGGCAGTACCTCTGATG
EST: gi|22015285|gb|BQ800319.1|BQ800319
EST:     GGAGGAATGCAGAGCATCTTCTG                         GCCGTTTTTGAGACGAGATTGAAAGATATGGCTATGGCAGTACCTCTGATG
genomic: GGAGGAATGCAGAGCATCTTCTGgtgtgttttg ... gatggtacagGCCGTTTTTGAGACGAGATTGAAAGATATGGCTATGGCAGTACCTCTGATG
EST: gi|110390735|gb|EC955661.1|EC955661
EST:     TTGCTGGCAGTTGGTTTGAGCGGCACAGGAGGAATGCAGAGCATCTTCTG                         GCCGTTTTTGAGACGAGATTGAAAGATATGGCTATGGCAGTACCTCTGATG
genomic: TTGCTGGCAGTTGGTTTGAGCGGCACAGGAGGAATGCAGAGCATCTTCTGgtgtgttttg ... gatggtacagGCCGTTTTTGAGACGAGATTGAAAGATATGGCTATGGCAGTACCTCTGATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCAGGGAACTCGGTGTCTGTGATCAATCTTGTAAGATTGACCTCCATGGTTGCTGGCAGTTGGTTTGAGCGGCACAGGAGGAATGCAGAGCATCTTCTGgtgtgttttgtttcactgaaagtgttaatctgtcaaattgaatctgaatttgcaagaatccttgacttgtccccaatttctaatgatggtacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA