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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGAGCCTGAGACATCCAGTGCCATGGGCTTTGGCTTTAGGTGTGGGTTCTTGGGTCTTCTCCATATGGAAATCATTCAGgtccacatgctttcaactgcatctctgctgctcctttagtaattttatttgatcagtaattaatagattgctgacaaatttcaggaatcacaacacgttctctgataagtttacatcttgcag

Basic information

species Vitis vinifera
transcript Vv07s0031g03050.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GRMZM2G003157_T02 (Zea mays), 5'ss of exon 4
TTTGAGCCTGAGACATCCAGTGCCATGGGCTTTGGCTTTAGGTGTGGGTTCTTGGGTCTTCTCCATATGGAAATCATTCAGgtccacatgctttcaactgcatctctgctgctcctt-tagtaattttatt-tgatcagtaattaatagattgctgacaaatttcaggaatcacaacacgttctctgataagtttacatcttgcag
||||| || ||  | || ||||||||||| |||||||| || ||||||||| | ||||||||||||||||||||  ||||||| |  |   | | |  ||  ||   || |   ||  || |||    | | ||    |  |||  || |    |  |   ||||     |||                                 
TTTGAACCAGAATCTTCTAGTGCCATGGGGTTTGGCTTCAGATGTGGGTTCCTTGGTCTTCTCCATATGGAAATAGTTCAGgttcttacaatct-acttggttcatggcagtagctcataataaaaccactatggcttgacatttctacaaca-tagcttttttctattttcag--------------------------------

upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA06G16700.1 (Glycine max), 5'ss of exon 13
TTTGAGCCTGAGACATCCAGTGCCATGGGCTTTGGCTTTAGGTGTGGGTTCTTGGGTCTTCTCCATATGGAAATCATTCAGgtccacatgctttcaactgcatctctgctgctcctttagta------------attttatttgatcagtaat-taatagat-tgctgacaaatttcaggaatcacaacacgttctctgataagtttacatcttgcag
||||| ||||||||||| ||||||||||| ||||||||||| ||||||||  |||| ||||| |||||||||||  ||||||| |  ||   ||  |  ||||||   ||    ||||| ||            || || ||  ||   ||   |||| ||  | ||||  || ||  | || |    |   |  |   |    |||||||  |    
TTTGAACCTGAGACATCAAGTGCCATGGGATTTGGCTTTAGATGTGGGTTTCTGGGCCTTCTTCATATGGAAATTGTTCAGgttcgaatttgttgga--gcatctactctttgactttaataggaaatgcttgaatgttcttatatatatagcataattgacattctgattaactttggaaacctggtcttatcttacaagttctttacattatag--

upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA04G38360.1 (Glycine max), 5'ss of exon 13
TTTGAGCCTGAGACATCCAGTGCCATGGGCTTTGGCTTTAGGTGTGGGTTCTTGGGTCTTCTCCATATGGAAATCATTCAGgtccacatgctttcaactgcat-ctctgctgctcctttagtaatt---------ttatttgatcagtaattaatagattgctgacaaatttcaggaatcacaacacgttctctgataagtt-tacatcttgcag
||||| ||||||||||| ||||||||||| ||||||||||| ||||||||  |||| ||||| |||||||||||  ||||||| |  ||   ||  |     | ||||   |||    ||| ||||         || ||  ||  |  || | |    | ||||  || ||  | || |    |   || ||| | ||||| |  |  || |||
TTTGAACCTGAGACATCGAGTGCCATGGGATTTGGCTTTAGATGTGGGTTTCTGGGCCTTCTTCATATGGAAATTGTTCAGgttcgaatatgttggagcatctactctttggctttcataggaattgcttgaatgttcttatatatggcataattgacattctgattaactttggaaacctggtc---ttatcttacaagttctttacattacag

upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA04G33480.1 (Glycine max), 5'ss of exon 7
TTTGAGCCTGAGACATCCAGTGCCATGGGCTTTGGCTTTAGGTGTGGGTTCTTGGGTCTTCTCCATATGGAAATCATTCAGgtccacatgctttcaactgcat-ctctgctgctcctttagtaatt---------ttatttgatcagtaattaatagattgctgacaaatttcaggaatcacaacacgttctctgataagtttacatcttgcag
||||| ||||||||||| ||||||||||| ||||||||||  ||||||||  |||| ||||| |||||||||||  ||||||| |  ||   ||  |     | ||||   |||    ||| ||||         || ||  ||  |  || | |    | ||||  || ||  | || |    |   |  |   |    |||||||  | |||
TTTGAACCTGAGACATCGAGTGCCATGGGATTTGGCTTTATATGTGGGTTTCTGGGCCTTCTTCATATGGAAATTGTTCAGgttcgaatatgttggagcatctactctttggctttcataggaattgcttgaatgttcttatatatggcataattgacattctgattaactttggaaacctggtcttatcttaccagttctttacat--tacag

upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: AT5G08650.1 (Arabidopsis thaliana), 5'ss of exon 13
TTTGAGCCTGAGACATCCAGTGCCATGGGCTTTGGCTTTAGGTGTGGGTTCTTGGGTCTTCTCCATATGGAAATCATTCAGgtccacatgctttcaactgcatctctgctgctcctttagtaattttatttgatcagtaattaatagattgctgacaaatttcagg-aatcacaacacgttctctgataagtttacatcttgcag
||||||||||| || || ||||||||||| ||||||||||| || ||||| |||||||||||||| ||||||||  | |||||| | ||   ||   ||      || ||  | ||  |||  ||||  |   ||  | | | | |  || ||    ||    ||  |   | || |  |||   |||                 
TTTGAGCCTGAAACTTCGAGTGCCATGGGATTTGGCTTTAGATGCGGGTTTTTGGGTCTTCTCCACATGGAAATTGTGCAGgtc-agatatgtttcgct------cttcttgttctaaagtgtttttggtgcgtctctgactgaaaatttcctatgcaacagaagatagagaaaagaaattcatagat-----------------