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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGTACACTGGAGAACTGATTTCACACAGGGAAGCAGATAAGCGTGGAAAGATTTATGACCGTGAAAATTCTTCGTTTCTCTTTAATCTGAATGATCAGgcatatactcaatacaacctttgaatttggtttaaaacatactttctattttccattttttgaatagaaatatgaattgcaagattactttttctgcag

Basic information

species Vitis vinifera
transcript Vv07s0031g00320.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g00320.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: LOC_Os06g16390.1 (Oryza sativa), 5'ss of exon 15
TGAGTACACTGGAGAACTGATTTCACACAGGGAAGCAGATAAGCGTGGAAAGATTTATGACCGTGAAAATTCTTCGTTTCTCTTTAATCTGAATGATCAGgcatatactcaatacaacctttgaatttggtttaaaacatactttctattttccattttttgaatagaaatatgaattgcaagattactttttctgcag---
 ||||||||||| || || || || || |  ||||| || |||||||||||||| ||||||||||| ||||| ||||| || || ||  ||||  || |||    | |  || ||| ||    ||||  | |    |   | |    |||    | | |    ||   | || |  |      ||   |||   || |    
CGAGTACACTGGGGAGCTTATCTCCCATAAAGAAGCTGACAAGCGTGGAAAGATATATGACCGTGAGAATTCATCGTTCCTTTTCAACTTGAACAATGAGgtgagtgca-aagacaccccgcaaattacggtctgcaagcattcaggattgcatactgtactgatttgacta-gcctaatgtcatccttttgcgtgaaccga

upper sequence: Vv07s0031g00320.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GRMZM2G157820_T01 (Zea mays), 5'ss of exon 1
TGAGTACACTGGAGAACTGATTTCACACAGGGAAGCAGATAAGCGTGGAAAGATTTATGACCGTGAAAATTCTTCGTTTCTCTTTAATCTGAATGATCAGgcatatactcaatacaacctttgaatttggtttaaaacatactttctattttccattttttg--aatagaaatatgaa----ttgcaagattactttttctgcag-----------
|||||||||||| ||||| || |||||||  ||||||||||||||||||||||| ||||| ||||| || || ||||| || || || |||||  || ||| |  |   ||| |  | | |         || |     ||   |    |  |||  |  ||  | |||   |||        ||| | ||      || |   |           
TGAGTACACTGGGGAACTAATCTCACACAAAGAAGCAGATAAGCGTGGAAAGATATATGATCGTGAGAACTCATCGTTCCTTTTCAACCTGAACAATGAGgtaggtgtgcaagattatcctctgcaagcattcagttactatacttggctgaccacctgatgggactagtggtattgtccgtctgccatatgctgacttgtatcgtttgatcgcag

upper sequence: Vv07s0031g00320.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA11G05760.1 (Glycine max), 5'ss of exon 17
TGAGTACACTGGAGAACTGATTTCACACAGGGAAGCAGATAAGCGTGGAAAGATTTATGACCGTGAAAATTCTTCGTTTCTCTTTAATCTGAATGATCAGgcatatactcaatacaacctt-tgaatttggtttaaaacatactttctattttccattttt-tgaat-----agaaatatgaattgcaagattactttttctgcag
 ||||| ||||||||  ||||||| ||  |||||||||||||||| |||||||| ||||||||||||||||| || |||||||||||| ||||||||||||||     |   ||| || ||     ||| ||     | |   | | ||| || ||| | | || ||     | | ||| ||    |||||||  | | | |||||
AGAGTATACTGGAGAGTTGATTTCTCATCGGGAAGCAGATAAGCGAGGAAAGATATATGACCGTGAAAATTCATCTTTTCTCTTTAATTTGAATGATCAGgcaagcttt---tacgactttgcatcttttgtgggtgataagttctttatgttacatatatatgcatgtatcaaacataggatgaacaagattgttgtatatgcag

upper sequence: Vv07s0031g00320.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA01G39490.1 (Glycine max), 5'ss of exon 17
TGAGTACACTGGAGAACTGATTTCACACAGGGAAGCAGATAAGCGTGGAAAGATTTATGACCGTGAAAATTCTTCGTTTCTCTTTAATCTGAATGATCAGgcatatactcaatacaacctttgaatttggtttaaaacatactttct---attttc-cattttttgaatagaaatatgaattgcaagattactttttctgcag
                  |||||| ||  |||||||||||||||| |||||||| ||||||||||||||||| || |||||||| ||| |||| |||||||||     | |  ||    | |   ||  |    | |  | |||| |   || | | ||| | |  || | |   |||||   || ||||  | | | |||||
------------------GATTTCTCATCGGGAAGCAGATAAGCGAGGAAAGATATATGACCGTGAAAATTCATCTTTTCTCTTCAATTTGAACGATCAGGCAAGCTTTTATGACTTTgtatcttttgtgggcgataagttctttgttacatatacgcatgtatcaaacacagg-atgaaccacacgattgttgtatatgcag