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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATCAGATTTTGACAGCCATACTTGAGATTTTGGATGATTCTGATTCTTCAATCCGGGAACTTGCTCTTTCATTGATAGTTGAAATGCTAAAAAATCAGgtttgttgcatttatttatggtgcaccttgtggtccatttacactgcgtatttcatctcaagttaccaaatattattcccctaattgctttcctccattacctttcttattctcttcaaatgtgccctaacatttttatttttttttctgtttgcatttccag

Basic information

species Vitis vinifera
transcript Vv07s0005g05030.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g05030.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA13G19230.1 (Glycine max), 5'ss of exon 16
CAATCAGATTTTGACAGCCATACTTGAGATTTTGGATGATTCTGATTCTTCAATCCGGGAACTTGCTCTTTCATTGATAGTTGAAATGCTAAAAAATCAGgtttgttgcatttatttatggtgcaccttgtggtccatttacactgcgtatttcatctcaagttaccaaatattattcccctaattgctttcctccattacctttcttattctcttcaaatgtgccctaacatttttatttttttttctgtttgcatttccag
|||||||||||||||||   | |||||| |  |||||||||| ||||| |||||| | || |||||||| ||  |||||||||||||||| ||||| |||||| ||  |   | ||| || |     |||| |   | |  |  ||   || |||   |  |  ||   | ||    ||||| ||           || | |||| | |  |     ||  |       ||  ||| ||| || | | | ||    |||||||
CAATCAGATTTTGACAGTTGTGCTTGAGGTGCTGGATGATTCAGATTCCTCAATCAGAGAGCTTGCTCTGTCTCTGATAGTTGAAATGCTGAAAAACCAGgttcgt-actcctttttgtgctattttttgttggataatgcccttgttcatatcagtacttgcaactgcacatatgccccctcat-----------ataagctttttgagacataataagag-------accgtttaattgttgtgtttatt---gtttccag

upper sequence: Vv07s0005g05030.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA19G35460.1 (Glycine max), 5'ss of exon 16
CAATCAGATTTTGACAGCCATACTTGAGATTTTGGATGATTCTGATTCTTCAATCCGGGAACTTGCTCTTTCATTGATAGTTGAAATGCTAAAAAATCAGgtt--tgttgcatttatttatggtgcaccttgtggtccatttacactgcgtatttcatctcaagttaccaaatattattcccctaattgctttcctccattacctttcttattctcttcaaatgtgccctaacatttttatttttttttctgtttgcatttccag
|||||||||||||||||   | |||||| |  |||||||||| ||||| ||| ||   || |||||||||||| |||||||||||||||| ||||| ||||||  |  | | ||| ||     |     ||| ||     |||  ||    ||| | ||      |||| |  ||| | |     ||  ||||||||  | |    ||||  |   || |||  |   ||   | ||||||| ||                    
CAATCAGATTTTGACAGTAGTGCTTGAGGTGCTGGATGATTCAGATTCCTCAGTCAAAGAGCTTGCTCTTTCACTGATAGTTGAAATGCTTAAAAACCAGgttcctactccttttgttccatttttgttttgggga----ttatgctcttgattacgtc----agtacctacaattgtgc-----atatctttcctcagtcaaagatctttctgattttaaaatttaacttctacttttattgttcacag---------------

upper sequence: Vv07s0005g05030.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA03G32710.1 (Glycine max), 5'ss of exon 16
CAATCAGATTTTGACAGCCATACTTGAGATTTTGGATGATTCTGATTCTTCAATCCGGGAACTTGCTCTTTCATTGATAGTTGAAATGCTAAAAAATCAGgtt--tgttgcatttatttatggtgcaccttgtggtccatttac---actgcgtatttcatctcaagttaccaaatattattccccta--attgctttcctccattacctttcttattctcttcaaatgtgccctaacatttttattt--ttttttctgtttgcatttccag
|||||||||||||||||   | |||||| |  |||||||||| ||||| ||| ||   || |||||||||||| |||||||||||||||| ||||| ||||||  |  | | ||| |      |     ||| ||   ||   |   |    ||   |  |  ||| |   || || || ||    ||  ||              |  |   ||  | || | ||   |   || |  ||   ||||   || | || ||    ||  |||
CAATCAGATTTTGACAGTTGTGCTTGAGGTGCTGGATGATTCAGATTCCTCAGTCAAAGAGCTTGCTCTTTCACTGATAGTTGAAATGCTTAAAAACCAGgttcctactccttttgtcccattttagttttggggattatgctcttgatcatgtcaatgcttacaattgtgcatattttctttttgtagcataaggcattattggaaattaaatttatatcataaagatttttctgattttaaaatttaacttctacttttattgttcacag

upper sequence: Vv07s0005g05030.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA10G04850.1 (Glycine max), 5'ss of exon 16
CAATCAGATTTTGACAGCCATACTTGAGATTTTGGATGATTCTGATTCTTCAATCCGGGAACTTGCTCTTTCATTGATAGTTGAAATGCTAAAAAATCAGgtttgttgcatttatttatggtgcaccttgtggtccatttacactgcgtatttcatctcaagttaccaaatattattcccctaattgctttcctccattacctttcttattctcttcaaatgtgccctaacatttttatttttttttctgtttgcatttccag
|||||||||||||||||   | |||||| |  |||||||||| ||||| |||||| | || | |||||| ||  |||||||||||||||| ||||||||||||  |   | || ||| | ||||   || |  |    ||||||            ||||  | |     |   | | | |  ||  |   ||||   ||  ||| ||                                                       
CAATCAGATTTTGACAGTTGTGCTTGAGGTGCTGGATGATTCAGATTCCTCAATCAGAGAGCATGCTCTATCTCTGATAGTTGAAATGCTTAAAAATCAGgttctt---acttcttttttgtgccatttttcattggattacacc-------cttgctcatatcagtgtttgcaactgcacatatgccccccctcttgtaggtttttttg-----------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33407571|gb|CF213198.1|CF213198
EST:     CAATCCGGGGACTTGCTCTTTCATTGATAGTTGAAATGCTAAAAAATCAG                         AAAGGCTCCATGGAAGATCCAGTTGAGATCGTAATTGAAAAATTGCTTCAT
genomic: CAATCCGGGAACTTGCTCTTTCATTGATAGTTGAAATGCTAAAAAATCAGgtttgttgca ... gcatttccagAAAGGCTCCATGGAAGATTCAGTTGAGATCGTAATTGAAAAATTGCTTCAT
EST: gi|349827765|gb|FQ422633.1|FQ422633
EST:     CAATCCGGGAACTTGCTCTTTCATTGATAGTTGAAATGCTAAAAAATCAG                         AAAGGCTCCATGGAAGATTCAGTTGAGATCGTAATTGAAAAATTGCTTCAT
genomic: CAATCCGGGAACTTGCTCTTTCATTGATAGTTGAAATGCTAAAAAATCAGgtttgttgca ... gcatttccagAAAGGCTCCATGGAAGATTCAGTTGAGATCGTAATTGAAAAATTGCTTCAT
EST: gi|351056897|gb|FQ443524.1|FQ443524
EST:     CAATCCGGGAACTTGCTCTTTCATTGATAGTTGAAATGCTAAAAAATCAG                         AAAGGCTCCATGGAAGATTCAGTTGAGATCGTAATTTGAAAA
genomic: CAATCCGGGAACTTGCTCTTTCATTGATAGTTGAAATGCTAAAAAATCAGgtttgttgca ... gcatttccagAAAGGCTCCATGGAAGATTCAGTTGAGATCGTAATT-GAAAA
EST: gi|351024484|gb|FQ426293.1|FQ426293
EST:     CAATCCGGGAACTTGCTCTTTCATTGATAGTTGAAATGCTAAAAAATCAG                         AAAGGCTCCATGGGAAAATTCAGTTGAGATCG
genomic: CAATCCGGGAACTTGCTCTTTCATTGATAGTTGAAATGCTAAAAAATCAGgtttgttgca ... gcatttccagAAAGGCTCCATGG-AAGATTCAGTTGAGATCG
EST: gi|351046710|gb|FQ453326.1|FQ453326
EST:     CAATCCGGGAACTTGCTCTTTCATTGATAGTTGAAATGCTAAAAAATCAG                         AAAGGCTCCATGGAAGATTCAGTTGAGATCGTAATTGAAAAAATGCATCAT
genomic: CAATCCGGGAACTTGCTCTTTCATTGATAGTTGAAATGCTAAAAAATCAGgtttgttgca ... gcatttccagAAAGGCTCCATGGAAGATTCAGTTGAGATCGTAATTGAAAAATTGCTTCAT