1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
GCTGGCTGAGGAAGCTGTGGAGTTAGCTGTCAAAACTTGGGGAAAGAGATCGTTAACTGAGCTTGAAGCTGAGGAACGGTTGTCTTATTCTTGTGAAAAGgtgaaatttgcagaagatactgattttcatttatagaattatgattgcaaattaaaagacatttctacacagcacaagaataaatttcacttgattgtgt...
species | Vitis vinifera |
transcript | Vv07s0005g02610.t01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CGTTAACTGAGCTTGAAGCCGAGGAACGGTTGTCTTATTCTTGTGAAAAG GGCCCTGCTCAGGATGATGTCATAGCAAAGCTGCGCAGCGCCTTCTTAGAAEST: gi|110687042|gb|EE064104.1|EE064104
genomic: CGTTAACTGAGCTTGAAGCTGAGGAACGGTTGTCTTATTCTTGTGAAAAGgtgaaatttg ... gaatttgtagGGCCCTGCTCAGGATGATGTCATAGCAAAGCTGCGCAGCGCCTTCTTAGAA
EST: CGTTAACTGAGCTTGAAGCCGAGGAACGGTTGTCTTATTCTTGTGAAAAG GGCCCTGCTCAGGATGATGTCATAGCAAAGCTGCGCAGCGCCTTCTTAGAAEST: gi|110720527|gb|EE096525.1|EE096525
genomic: CGTTAACTGAGCTTGAAGCTGAGGAACGGTTGTCTTATTCTTGTGAAAAGgtgaaatttg ... gaatttgtagGGCCCTGCTCAGGATGATGTCATAGCAAAGCTGCGCAGCGCCTTCTTAGAA
EST: CGTTAACTGAGCTTGAAGCCGAGGAACGGTTGTCTTATTCTTGTGAAAAG GGCCCTGCTCAGGATGATGTCATAGCAAAGCTGCGCAGCGCCTTCTTAGAAEST: gi|28964893|gb|CB343926.1|CB343926
genomic: CGTTAACTGAGCTTGAAGCTGAGGAACGGTTGTCTTATTCTTGTGAAAAGgtgaaatttg ... gaatttgtagGGCCCTGCTCAGGATGATGTCATAGCAAAGCTGCGCAGCGCCTTCTTAGAA
EST: CGTTAACTGAGCTTGAAGCCGAGGAACGGTTGTCTTATTCTTGTGAAAAG GGCCCTGCTCAGGATGATGTCATAGCAAAGCTGCGCAGCGCCTTCTTAGAA
genomic: CGTTAACTGAGCTTGAAGCTGAGGAACGGTTGTCTTATTCTTGTGAAAAGgtgaaatttg ... gaatttgtagGGCCCTGCTCAGGATGATGTCATAGCAAAGCTGCGCAGCGCCTTCTTAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGGCTGAGGAAGCTGTGGAGTTAGCTGTCAAAACTTGGGGAAAGAGATCGTTAACTGAGCTTGAAGCTGAGGAACGGTTGTCTTATTCTTGTGAAAAGgtgaaatttgcagaagatactgattttcatttatagaattatgattgcaaattaaaagacatttctacacagcacaagaataaatttcacttgattgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaataaa