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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTTTCAAGTCTAATGCAGATGCTCCAACTTCAATCCCAACCAAGGCAGTCTTTGATTCTGCAAAACGGATTCAGGGTTCACATCCTTTAAAGCACCAGgtataacttgaaaagcattttgtttaacttttgttttatatttcgaacttatcattttattccatgatttatctatgcag

Basic information

species Vitis vinifera
transcript Vv06s0009g00690.t01
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|219555295|gb|FG984468.1|FG984468
EST:     TCTTTGATTCTGCAAAACGGATTCAGGGTTCACATCCTTTAAAGCACCAG                         TTACCTATGTTTGATCCCTCTCCAAAGACTAAACCCAGACATGATGGTATT
genomic: TCTTTGATTCTGCAAAACGGATTCAGGGTTCACATCCTTTAAAGCACCAGgtataacttg ... atctatgcagTTACCTATGTTTGATCCCTCTCCAAAGACTAAACCCAGACATGATGGTATT
EST: gi|37186576|gb|CF605929.1|CF605929
EST:     TCTTTGATTCTGCAAAACGGATTCAGGGTTCACATCCTTTAAAGCACCAG                         TTACCTATGTTTGATCCCTCTCCAAAGACTAAACCCAGACATGATGGTATT
genomic: TCTTTGATTCTGCAAAACGGATTCAGGGTTCACATCCTTTAAAGCACCAGgtataacttg ... atctatgcagTTACCTATGTTTGATCCCTCTCCAAAGACTAAACCCAGACATGATGGTATT