Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTATTTCAGCTATCTCTTCCACTCAACTTTCTCGGCAGTGTGTATCGTGAAACTATACAAAGTCTTGTTGACATGAAATCCATGTTTCAATTACTTGAGgtattacttaagcaatatcttctagtttttcctggcagtttaagattcattgatgtcaagttcaatttctgttagttttatctgttatatagtttatttt...

Basic information

species Vitis vinifera
transcript Vv06s0004g08350.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g08350.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GRMZM2G032936_T01 (Zea mays), 5'ss of exon 6
TCTATTTCAGCTATCTCTTCCACTCAACTTTCTCGGCAGTGTGTATCGTGAAACTATACAAAGTCTTGTTGACATGAAATCCATGTTTCAATTACTTGAGgtattacttaag--caatatcttctagtttttcctggc---agtttaagattcattgatgtcaagttcaatttctgttagttttatctgttatatagtttatttt-
| |||| ||||| ||  | || || ||||| || || ||||||||||| ||| ||| |||||| ||  |||||||||| || |||||||| || |||||||||    || |     | ||  || ||| |||   | |   | ||| || |||||      |   | |  | |||| || |||    | |  | || ||| ||   
TTTATTCCAGCTTTCATTACCTCTGAACTTCCTTGGGAGTGTGTATCGAGAATCTAGACAAAGCCTCATTGACATGAAGTCAATGTTTCAGTTGCTTGAGgtaaagttttatattgaaattatcaagtctttaaagaccttaatttcagtttcatactcaactcatgc--tctctgatactttagattatgttttaattttttaag

upper sequence: Vv06s0004g08350.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA14G38800.1 (Glycine max), 5'ss of exon 10
TCTATTTCAGCTATCTCTTCCACTCAACTTTCTCGGCAGTGTGTATCGTGAAACTATACAAAGTCTTGTTGACATGAAATCCATGTTTCAATTACTTGAGgtattacttaagcaatatcttctagtttttcctggcagtttaagattcattgatgtcaagttcaatttctgttagttttatctgttatatagtttatttt
||| || || ||||||||||||||||| || || || ||||| |||||||| ||||| || ||||| ||||||||||| ||||||||||| ||||||||||||| |     |    || ||   |  || ||| |||||| |   |  ||   | |    |     || ||  | || | ||| |||  |   | | |  
TCTCTTCCAACTATCTCTTCCACTCAATTTCCTTGGTAGTGTTTATCGTGAGACTATTCAGAGTCTAGTTGACATGAAGTCCATGTTTCAGTTACTTGAGgtatcatccccgtggaattttaatgaattaccttgcagttaattttaaatatgtattgtttgttgattatgaaatttctttcttttacttcagtaagtac

upper sequence: Vv06s0004g08350.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA02G40490.1 (Glycine max), 5'ss of exon 10
TCTATTTCAGCTATCTCTTCCACTCAACTTTCTCGGCAGTGTGTATCGTGAAACTATACAAAGTCTTGTTGACATGAAATCCATGTTTCAATTACTTGAGgtattacttaagcaatatcttctagtttttcctggcagtttaagattcattgatgtcaagttcaatttctgtta-gttttatctgttatatagtttatttt-
 || || || ||||||||||||||||| || || || ||||| |||||||| ||||| || ||||| ||||||||||| |||||||||||  ||||||||||||       |    || ||   |  || ||| ||||||  |  || ||   ||    ||| | | |    || |  || ||| |  | || || | | | 
ACTCTTCCAACTATCTCTTCCACTCAATTTCCTTGGTAGTGTTTATCGTGAGACTATTCAGAGTCTAGTTGACATGAAGTCCATGTTTCAGCTACTTGAGgtatcttccctgtggaattttaatgaattaccttgcagtt--aattttatatgtgcattgttgattatgaaatatgaattttctttcttttacttcagtatg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18458309|gb|BM436587.1|BM436587
EST:     AAACTATACAAAGTCTTGTTGACATGAAATCCATGTTTCAATTACTTGAG                         GAGAGGCCTGATATTAGGAATGCAGATGATGCAAAGCCTTTGAAGTTAAGT
genomic: AAACTATACAAAGTCTTGTTGACATGAAATCCATGTTTCAATTACTTGAGgtattactta ... atttctgcagGAGAGGCCTGATATTAGGAATGCAGATGATGCAAAGCCTTTGAAGTTAAGT
EST: gi|110698612|gb|EE076310.1|EE076310
EST:     AAACTATACAAAGTCTTGTTGACATGAAATCCATGTTTCAATTACTTGAG                         GAGAGGCCTGATATTAGGAATGCAGATGATGCAAAGCCTTTGAAGTTAAGT
genomic: AAACTATACAAAGTCTTGTTGACATGAAATCCATGTTTCAATTACTTGAGgtattactta ... atttctgcagGAGAGGCCTGATATTAGGAATGCAGATGATGCAAAGCCTTTGAAGTTAAGT