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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAAGCGTAGAGGAAAAGAAACAATGTGTCCTAGTGATGGGTTTGTCTATTTCCGAAATAGCGAACTAATATCTGGGCAACTTGGGAAGGCTACTTTAGgtccgtttcctgtccatttctaacatatttccattttcatggattatttgcttttaatcaacagtcccacaatatttagcttctttttacgaaatatctg...

Basic information

species Vitis vinifera
transcript Vv06s0004g03740.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g03740.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: LOC_Os04g41490.1 (Oryza sativa), 5'ss of exon 13
AACAAGCGTAGAGGAAAAGAAACAATGTGTCCTAGTGATGGGTTTGTCTATTTCCGAAATAGCGAACTAATATCTGGGCAACTTGGGAAGGCTACTTTAGgtccgtttcctgtccatttctaacatatttccattttcatggattatttgcttttaatcaacagtcccacaatatttagcttctttttacgaaatatctg---
        |   | |   ||| |||||||||| | |||||| |||||||| |||||||| || |||||  ||||||||||| |||||||||| |||||||||  |  |||   ||| | || |   ||  | |     |  |   |  || |  |  | |  | || | |  |    |   | |   |||    | |||    
GGTTCAACTCTGGAACCTGAAGCAATGTGTCCCAATGATGGTTTTGTCTACTTCCGAAACAGTGAACTTCTATCTGGGCAAGTTGGGAAGGCCACTTTAGgtgagaatcccacccagtactgattcatagctaaaacgactgccaacctgataatcctaagtactcactctgtcccaaaaatataggtacc---tctctaatc

upper sequence: Vv06s0004g03740.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GRMZM2G080176_T01 (Zea mays), 5'ss of exon 13
-AACAAGCGTAGAGGAAAAGAAACAATGTGTCCTAGTGATGGGTTTGTCTATTTCCGAAATAGCGAACTAATATCTGGGCAACTTGGGAAGGCTACTTTAGgtccgtttcc-------tgtccatttctaaca--tatttccattttcatggattatttg--cttttaatcaacagtcccacaatatttagcttctttttacgaaatatctg-----------------------------------
 ||  |  || | ||||  |||||||||||||| | |||||| | ||| |||||||||||||| |||||  ||||||| ||| | |||||||| |||||||||   | |         | | || || || ||  |||| | |  |     | |  || |  | | ||||  |  | |      ||||||  |  |||  | |||  || ||                                   
GAAACAATGT-GTGGAAGGGAAACAATGTGTCCCAATGATGGTTATGTTTATTTCCGAAATAGTGAACTGTTATCTGGACAAGTAGGGAAGGCCACTTTAGgtaattattagaaagaatatgcaattttatcagttattactaaatattctgttccttagttcctataatttatgggcatctgttattta--tgttttacatgaag-atttgggaacaataaaaaatgatgaagcctttgtcttcag