1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ATGGATTCCACCTGGTTGCCTGTACACATGTGGGCCTGGAAGTTACAAAATTCCTTCTATCAATGATGTCCCCTTAAAATTTGATGTTTCACTTCTGAAGgtagagaaactaccaatctcacatcaatacttaatgggtgtttggacaaccctcctgagagtactccattatgttacgcatggcatttgtttttgtgaaa...
species | Vitis vinifera |
transcript | Vv06s0004g02030.t01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TTCCTTCTATCAATGATGTCCCCTTAAAATTTGATGTTTCACTTCTGAAG GGTGCTCCAAATCCAAAGGCCATCCATTCATCCAAGGCTGTGGGTGAGCCTEST: gi|22014527|gb|BQ799561.1|BQ799561
genomic: TTCCTTCTATCAATGATGTCCCCTTAAAATTTGATGTTTCACTTCTGAAGgtagagaaac ... tatctgacagGGTGCTCCAAATCCAAAGGCCATCCATTCATCCAAGGCTGTGGGTGAGCCT
EST: TTCCTTCTATCAATGATGTCCCCTTAAAATTTGATGTTTCACTTCTGAAG GGTGCTCCAAATCCAAAGGCCATCCATTCATCCAAGGCTGTGGGTGAGCCTEST: gi|110428986|gb|EC995472.1|EC995472
genomic: TTCCTTCTATCAATGATGTCCCCTTAAAATTTGATGTTTCACTTCTGAAGgtagagaaac ... tatctgacagGGTGCTCCAAATCCAAAGGCCATCCATTCATCCAAGGCTGTGGGTGAGCCT
EST: TTCCTTCTATCAATGATGTCCCCTTAAAATTTGATGTTTCACTTCTGAAG GGTGCTCCAAATCCAAAGGCCATCCATTCATCCAAGGCTGTGGGTGAGCCTEST: gi|22014504|gb|BQ799538.1|BQ799538
genomic: TTCCTTCTATCAATGATGTCCCCTTAAAATTTGATGTTTCACTTCTGAAGgtagagaaac ... tatctgacagGGTGCTCCAAATCCAAAGGCCATCCATTCATCCAAGGCTGTGGGTGAGCCT
EST: TTCCTTCTATCAATGATGTCCCCTTAAAATTTGATGTTTCACTTCTGAAG GGTGCTCCAAATCCAAAGGCCATCCATTCATCCAAGGCTGTGGGTGAGCCTEST: gi|22014556|gb|BQ799590.1|BQ799590
genomic: TTCCTTCTATCAATGATGTCCCCTTAAAATTTGATGTTTCACTTCTGAAGgtagagaaac ... tatctgacagGGTGCTCCAAATCCAAAGGCCATCCATTCATCCAAGGCTGTGGGTGAGCCT
EST: TTCCTTCTATCAATGATGTCCCCTTAAAATTTGATGTTTCACTTCTGAAG GGTGCTCCAAATCCAAAGGCCATCCATTCATCCAAGGCTGTGGGTGAGCCTEST: gi|110368506|gb|EC932487.1|EC932487
genomic: TTCCTTCTATCAATGATGTCCCCTTAAAATTTGATGTTTCACTTCTGAAGgtagagaaac ... tatctgacagGGTGCTCCAAATCCAAAGGCCATCCATTCATCCAAGGCTGTGGGTGAGCCT
EST: TTCCTTCTATCAATGATGTCCCCTTAAAATTTGATGTTTCACTTCTGAAG GGTGCTCCAAATCCAAAGGCCATCCATTCATCCAAGGCTGTGGGTGAGCCTEST: gi|110422800|gb|EC989131.1|EC989131
genomic: TTCCTTCTATCAATGATGTCCCCTTAAAATTTGATGTTTCACTTCTGAAGgtagagaaac ... tatctgacagGGTGCTCCAAATCCAAAGGCCATCCATTCATCCAAGGCTGTGGGTGAGCCT
EST: TTCCTTCTATCAATGATGTCCCCTTAAAATTTGATGTTTCACTTCTGAAG GGTGCTCCAAATCCAAAGGCCATCCATTCATCCAAGGCTGTGGGTGAGCCTEST: gi|110699874|gb|EE077267.1|EE077267
genomic: TTCCTTCTATCAATGATGTCCCCTTAAAATTTGATGTTTCACTTCTGAAGgtagagaaac ... tatctgacagGGTGCTCCAAATCCAAAGGCCATCCATTCATCCAAGGCTGTGGGTGAGCCT
EST: TTCCTTCTATCAATGATGTCCCCTTAAAATTTGATGTTTCACTTCTGAAG GGTGCTCCAAATCCAAAGGCCATCCATTCATCCAAGGCTGTGGGTGAGCCTEST: gi|22014924|gb|BQ799958.1|BQ799958
genomic: TTCCTTCTATCAATGATGTCCCCTTAAAATTTGATGTTTCACTTCTGAAGgtagagaaac ... tatctgacagGGTGCTCCAAATCCAAAGGCCATCCATTCATCCAAGGCTGTGGGTGAGCCT
EST: TTCCTTCTATCAATGATGTCCCCTTAAAATTTGATGTTTCACTTCTGAAG GGTGCTCCAAATCCAAAGGCCATCCATTCATCCAAGGCTGTGGGTGAGCCT
genomic: TTCCTTCTATCAATGATGTCCCCTTAAAATTTGATGTTTCACTTCTGAAGgtagagaaac ... tatctgacagGGTGCTCCAAATCCAAAGGCCATCCATTCATCCAAGGCTGTGGGTGAGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGATTCCACCTGGTTGCCTGTACACATGTGGGCCTGGAAGTTACAAAATTCCTTCTATCAATGATGTCCCCTTAAAATTTGATGTTTCACTTCTGAAGgtagagaaactaccaatctcacatcaatacttaatgggtgtttggacaaccctcctgagagtactccattatgttacgcatggcatttgtttttgtgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagagta