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TGAAGGCTGCTAATGAAGCTGAGGCTGCTTGCCAACAAAGGCTTTCTGCTGCCGAAGCAGAAATAGCTGATTTAAGAGCCAAACTGGATGCTTCTGAGAGgtttgttcttcattcatttttttttcttttctcattgcttgaggttttgggttttgtgaaggcaattaattagcttataggaaaagaatcacttgtattt...
species | Vitis vinifera |
transcript | Vv06s0004g00950.t01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GCCGAAGCAGAAATAGCTGATTTAAGAGCCAAACTGGATGCTTCTGAGAG GGATGTTTTGGAGCTTAAGGAGGCCATTAGAATTAAAGATGTGGAAGCAGAEST: gi|349815944|gb|FQ403561.1|FQ403561
genomic: GCCGAAGCAGAAATAGCTGATTTAAGAGCCAAACTGGATGCTTCTGAGAGgtttgttctt ... ttgcatgcagGGATGTTTTGGAGCTTAAGGAGGCCATTAGAATTAAAGATGTGGAAGCAGA
EST: GCCGAAGCAGAAATAGCTGATTTAAGAGCCAAACTGGATGCTTCTGAGAG GGATGTTTTGGAGCTTAAGGAGGCCATTAGAATTAAAGATGTGGAAGCAGAEST: gi|349812094|gb|FQ410891.1|FQ410891
genomic: GCCGAAGCAGAAATAGCTGATTTAAGAGCCAAACTGGATGCTTCTGAGAGgtttgttctt ... ttgcatgcagGGATGTTTTGGAGCTTAAGGAGGCCATTAGAATTAAAGATGTGGAAGCAGA
EST: GCCGAAGCAGAAATAGCTGATTTAAGAGCCAAACTGGATGCTTCTGAGAG GGATGTTTTGGAGCTTAAGGAGGCCATTAGAATTAAAGATGTGGAAGCAGAEST: gi|349812081|gb|FQ410878.1|FQ410878
genomic: GCCGAAGCAGAAATAGCTGATTTAAGAGCCAAACTGGATGCTTCTGAGAGgtttgttctt ... ttgcatgcagGGATGTTTTGGAGCTTAAGGAGGCCATTAGAATTAAAGATGTGGAAGCAGA
EST: GCCGAAGCAGAAATAGCTGATTTAAGAGCCAAACTGGATGCTTCTGAGAG GGATGTTTTGGAGCTTAAGGAGGCCATTAGAATTAAAGATGTGGAAGCAGAEST: gi|349808021|gb|FQ402412.1|FQ402412
genomic: GCCGAAGCAGAAATAGCTGATTTAAGAGCCAAACTGGATGCTTCTGAGAGgtttgttctt ... ttgcatgcagGGATGTTTTGGAGCTTAAGGAGGCCATTAGAATTAAAGATGTGGAAGCAGA
EST: GCCGAAGCAGAAATAGCTGATTTAAGAGCCAAACTGGATGCTTCTGAGAG GGATGTTTTGGAGCTTAAGGAGGCCATTAGAATTAAAGATGTGGAAGCAGA
genomic: GCCGAAGCAGAAATAGCTGATTTAAGAGCCAAACTGGATGCTTCTGAGAGgtttgttctt ... ttgcatgcagGGATGTTTTGGAGCTTAAGGAGGCCATTAGAATTAAAGATGTGGAAGCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAGGCTGCTAATGAAGCTGAGGCTGCTTGCCAACAAAGGCTTTCTGCTGCCGAAGCAGAAATAGCTGATTTAAGAGCCAAACTGGATGCTTCTGAGAGgtttgttcttcattcatttttttttcttttctcattgcttgaggttttgggttttgtgaaggcaattaattagcttataggaaaagaatcacttgtattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaggcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaa