1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGGCACTGCATCCTAAAGAgtatgcccttgtacatgatcatttgttcattgtgtgaaataacggggctagggttgattgtgacattgtatctcaagttttgttttcctttttcatccttgaaagttaatgtcatcgttcttttcttttttccag
species | Vitis vinifera |
transcript | Vv05s0077g02310.t01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CTCACACACCATAAGAAATCTGTGAGGGCAATGGCACTGCATCCTAAAGA GCATACTTTTGCATCTGCATCAGCTGACAACATAAAGAAATTTAATCTTCCEST: gi|77578499|gb|DV218043.1|DV218043
genomic: CTCACACACCATAAGAAATCTGTGAGGGCAATGGCACTGCATCCTAAAGAgtatgccctt ... ttttttccagGCATACTTTTGCATCTGCATCAGCTGACAACATAAAGAAATTTAATCTTCC
EST: CTCACACACCATAAGAAATCTGTGAGGGCAATGGCACTGCATCCTAAAGA GCATACTTTTGCATCTGCAEST: gi|254917683|gb|GR903335.1|GR903335
genomic: CTCACACACCATAAGAAATCTGTGAGGGCAATGGCACTGCATCCTAAAGAgtatgccctt ... ttttttccagGCATACTTTTGCATCTGCA
EST: CTCACACACCATAAGAAATCTGTGAGGGCAATGGCACTGCATCCTAAAGA GCATACTTTTGCATCTGCATCAGCTGACAACATAAAGAAATTTAATCTTCCEST: gi|349818063|gb|FQ408838.1|FQ408838
genomic: CTCACACACCATAAGAAATCTGTGAGGGCAATGGCACTGCATCCTAAAGAgtatgccctt ... ttttttccagGCATACTTTTGCATCTGCATCAGCTGACAACATAAAGAAATTTAATCTTCC
EST: CTCACACACCATAAGAAATCTGTGAGGGCAATGGCACTGCATCCTAAAGA GCATACTTTTGCATCTGCATCAGCTGACAACATAAAGAAATTTAATCTTCCEST: gi|351038798|gb|FQ464664.1|FQ464664
genomic: CTCACACACCATAAGAAATCTGTGAGGGCAATGGCACTGCATCCTAAAGAgtatgccctt ... ttttttccagGCATACTTTTGCATCTGCATCAGCTGACAACATAAAGAAATTTAATCTTCC
EST: CTCACACACCATAAGAAATCTGTGAGGGCAATGGCACTGCATCCTAAAGA GCATACTTTTGCATCTGCATCAGCTGACAACATAAAGAAATTTAATCTTCCEST: gi|110384526|gb|EC948969.1|EC948969
genomic: CTCACACACCATAAGAAATCTGTGAGGGCAATGGCACTGCATCCTAAAGAgtatgccctt ... ttttttccagGCATACTTTTGCATCTGCATCAGCTGACAACATAAAGAAATTTAATCTTCC
EST: CTCACACACCATAAGAAATCTGTGAGGGCAATGGCACTGCATCCTAAAGA GCATACTTTTGCATCTGCATCAGCTGACAACATAAAGAAATTTAATCTTCCEST: gi|110724126|gb|EE099691.1|EE099691
genomic: CTCACACACCATAAGAAATCTGTGAGGGCAATGGCACTGCATCCTAAAGAgtatgccctt ... ttttttccagGCATACTTTTGCATCTGCATCAGCTGACAACATAAAGAAATTTAATCTTCC
EST: CTCACACACCATAAGAAATCTGTGAGGGCAATGGCACTGCATCCTAAAGA GCATACTTTTGCATCTGCATCAGCTGACAACATAAAGAAATTTAATCTTCCEST: gi|110418369|gb|EC984516.1|EC984516
genomic: CTCACACACCATAAGAAATCTGTGAGGGCAATGGCACTGCATCCTAAAGAgtatgccctt ... ttttttccagGCATACTTTTGCATCTGCATCAGCTGACAACATAAAGAAATTTAATCTTCC
EST: CTCACACACCATAAGAAATCTGTGAGGGCAATGGCACTGCATCCTAAAGA GCATACTTTTGCATCTGCATCAGCTGACAACATAAAGAAATTTAATCTTCCEST: gi|110418288|gb|EC984425.1|EC984425
genomic: CTCACACACCATAAGAAATCTGTGAGGGCAATGGCACTGCATCCTAAAGAgtatgccctt ... ttttttccagGCATACTTTTGCATCTGCATCAGCTGACAACATAAAGAAATTTAATCTTCC
EST: CTCACACACCATAAGAAATCTGTGAGGGCAATGGCACTGCATCCTAAAGA GCATACTTTTGCATCTGCATCAGCTGACAACATAAAGAAATTTAATCTTCCEST: gi|161707291|gb|FC057696.1|FC057696
genomic: CTCACACACCATAAGAAATCTGTGAGGGCAATGGCACTGCATCCTAAAGAgtatgccctt ... ttttttccagGCATACTTTTGCATCTGCATCAGCTGACAACATAAAGAAATTTAATCTTCC
EST: CTCACACACCATAAGAAATCTGTGAGGGCAATGGCACTGCATCCTAAAGA GCATACTTTTGCATCTGCATCAGCTGACAACATAAAG
genomic: CTCACACACCATAAGAAATCTGTGAGGGCAATGGCACTGCATCCTAAAGAgtatgccctt ... ttttttccagGCATACTTTTGCATCTGCATCAGCTGACAACATAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGGCACTGCATCCTAAAGAgtatgcccttgtacatgatcatttgttcattgtgtgaaataacggggctagggttgattgtgacattgtatctcaagttttgttttcctttttcatccttgaaagttaatgtcatcgttcttttcttttttccag
- - - - - - - - - - - - - - AAGAAA