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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTTTCTTTATTAAAGGAAGACAGCACCTTTATTCAAGAACTGTTTGTGAGGTTGAGATTATCAAGCACTTCTGCGGAATCTAAGAAAAATTTGgtaattgctacatgggaatacatttttttttatgggtttgttacatggggatacattgttatcatttttttattgttttagctatcgtgatggtaatgtg...

Basic information

species Vitis vinifera
transcript Vv05s0077g01200.t01
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32248391|gb|CD714210.1|CD714210
EST:     TTGTGAGGTTGAGATTATCAAGCACTTCTGCGGAATCTAAGAAAAATTTG                         GTATTTTTCTTATATGAGTTTTGTAGTTTAAGCAAGAGCTTGCAGATGGTC
genomic: TTGTGAGGTTGAGATTATCAAGCACTTCTGCGGAATCTAAGAAAAATTTGgtaattgcta ... ataaatgtagGTATTTTTCTTATATGAGTTTTGTAGTTTAAGCAAGAGCTTGCAGATGGTC
EST: gi|32267561|gb|CD716524.1|CD716524
EST:     TTGTGAGGTTGAGATTATCAAGCACTTCTGCGGAATCTAAGAAAAATTTG                         GTATTTTTCTTATATGAGTTTTGTAGTTTAAGCAAGAGCTTGCAGATGGTC
genomic: TTGTGAGGTTGAGATTATCAAGCACTTCTGCGGAATCTAAGAAAAATTTGgtaattgcta ... ataaatgtagGTATTTTTCTTATATGAGTTTTGTAGTTTAAGCAAGAGCTTGCAGATGGTC
EST: gi|30324963|gb|CD008225.1|CD008225
EST:     TTGTGAGGTTGAGATTATCAAGCACTTCTGCGGAATCTAAGAAAAATTTG                         GTATTTTTCTTATATGAGTTTTGTAGTTTAAGCAAGAGCTTGCAGATGGTC
genomic: TTGTGAGGTTGAGATTATCAAGCACTTCTGCGGAATCTAAGAAAAATTTGgtaattgcta ... ataaatgtagGTATTTTTCTTATATGAGTTTTGTAGTTTAAGCAAGAGCTTGCAGATGGTC
EST: gi|110711495|gb|EE088040.1|EE088040
EST:     TTGTGAGGTTGAGATTATCAAGCACTTCTGCGGAATCTAAGAAAAATTTG                         GTATTTTTCTTATATGAGTTTTGTAGTTTAAGCAAGAGCTTGCAGATGGTC
genomic: TTGTGAGGTTGAGATTATCAAGCACTTCTGCGGAATCTAAGAAAAATTTGgtaattgcta ... ataaatgtagGTATTTTTCTTATATGAGTTTTGTAGTTTAAGCAAGAGCTTGCAGATGGTC
EST: gi|161705859|gb|FC057136.1|FC057136
EST:     TTGTGAGGTTGAGATTATCAAGCACTTCTGCGGAATCTAAGAAAAATTTG                         GTATTTTTCTTATATGAGTTTTGTAGTTTAAGCAAGAGCTTGCAGATGGTC
genomic: TTGTGAGGTTGAGATTATCAAGCACTTCTGCGGAATCTAAGAAAAATTTGgtaattgcta ... ataaatgtagGTATTTTTCTTATATGAGTTTTGTAGTTTAAGCAAGAGCTTGCAGATGGTC
EST: gi|32272042|gb|CD721201.1|CD721201
EST:     TTGTGAGGTTGAGATTATCAAGCACTTCTGCGGAATCTAAGAAAAATTTG                         GTATTTTTCTTATATGAGTTTTGTAGTTTAAGCAAGAGCTTGCAGATGGTC
genomic: TTGTGAGGTTGAGATTATCAAGCACTTCTGCGGAATCTAAGAAAAATTTGgtaattgcta ... ataaatgtagGTATTTTTCTTATATGAGTTTTGTAGTTTAAGCAAGAGCTTGCAGATGGTC
EST: gi|32270535|gb|CD719694.1|CD719694
EST:     TTGTGAGGTTGAGATTATCAAGCACTTCTGCGGAATCTAAGAAAAATTTG                         GTATTTTTCTTATATGAGTTTTGTAGTTTAAGCAAGAGCTTGCAGATGGTC
genomic: TTGTGAGGTTGAGATTATCAAGCACTTCTGCGGAATCTAAGAAAAATTTGgtaattgcta ... ataaatgtagGTATTTTTCTTATATGAGTTTTGTAGTTTAAGCAAGAGCTTGCAGATGGTC
EST: gi|32269076|gb|CD718235.1|CD718235
EST:     TTGTGAGGTTGAGATTATCAAGCACTTCTGCGGAATCTAAGAAAAATTTG                         GTATTTTTCTTATATGAGTTTTGTAGTTTAAGCAAGAGCTTGCAGATGGTC
genomic: TTGTGAGGTTGAGATTATCAAGCACTTCTGCGGAATCTAAGAAAAATTTGgtaattgcta ... ataaatgtagGTATTTTTCTTATATGAGTTTTGTAGTTTAAGCAAGAGCTTGCAGATGGTC
EST: gi|30326297|gb|CD009559.1|CD009559
EST:     TTGTGAGGTTGAGATTATCAAGCACTTCTGCGGAATCTAAGAAAAATTTG                         GTATTTTTCTTATATGAGTTTTGTAGTTTAAGCAAGAGCTTGCAGATGGTC
genomic: TTGTGAGGTTGAGATTATCAAGCACTTCTGCGGAATCTAAGAAAAATTTGgtaattgcta ... ataaatgtagGTATTTTTCTTATATGAGTTTTGTAGTTTAAGCAAGAGCTTGCAGATGGTC
EST: gi|32270540|gb|CD719699.1|CD719699
EST:     TTGTGAGGTTGAGATTATCAAGCACTTCTGCGGAATCTAAGAAAAATTTG                         GTATTTTTCTTATATGAGTTTTGTAGTTTAAGCAAGAGCTTGCAGATGGTC
genomic: TTGTGAGGTTGAGATTATCAAGCACTTCTGCGGAATCTAAGAAAAATTTGgtaattgcta ... ataaatgtagGTATTTTTCTTATATGAGTTTTGTAGTTTAAGCAAGAGCTTGCAGATGGTC
EST: gi|30325174|gb|CD008436.1|CD008436
EST:     TTGTGAGGTTGAGATTATCAAGCACTTCTGCGGAATCTAAGAAAAATTTG                         GTATTTTTCTTATATGAGTTTTGTAGTTTAAGCAAGAGCTTGCAGATGGTC
genomic: TTGTGAGGTTGAGATTATCAAGCACTTCTGCGGAATCTAAGAAAAATTTGgtaattgcta ... ataaatgtagGTATTTTTCTTATATGAGTTTTGTAGTTTAAGCAAGAGCTTGCAGATGGTC
EST: gi|30324365|gb|CD007627.1|CD007627
EST:     TTGTGAGGTTGAGATTATCAAGCACTTCTGCGGAATCTAAGAAAAATTTG                         GTATTTTTCTTATATGAGTTTTGTAGTTTAAGCAAGAGCTTGCAGATGGTC
genomic: TTGTGAGGTTGAGATTATCAAGCACTTCTGCGGAATCTAAGAAAAATTTGgtaattgcta ... ataaatgtagGTATTTTTCTTATATGAGTTTTGTAGTTTAAGCAAGAGCTTGCAGATGGTC
EST: gi|30325851|gb|CD009113.1|CD009113
EST:     TTGTGAGGTTGAGATTATCAAGCACTTCTGCGGAATCTAAGAAAAATTTG                         GTATTTTTCTTATATGAGTTTTGTAGTTTAAGCAAGAGCTTGCAGATGGTC
genomic: TTGTGAGGTTGAGATTATCAAGCACTTCTGCGGAATCTAAGAAAAATTTGgtaattgcta ... ataaatgtagGTATTTTTCTTATATGAGTTTTGTAGTTTAAGCAAGAGCTTGCAGATGGTC
EST: gi|30327653|gb|CD010915.1|CD010915
EST:     TTGTGAGGTTGAGATTATCAAGCACTTCTGCGGAATCTAAGAAAAATTTG                         GTATTTTTCTTATATGAGTTTTGTAGTTTAAGCAAGAGCTTGCAGATGGTC
genomic: TTGTGAGGTTGAGATTATCAAGCACTTCTGCGGAATCTAAGAAAAATTTGgtaattgcta ... ataaatgtagGTATTTTTCTTATATGAGTTTTGTAGTTTAAGCAAGAGCTTGCAGATGGTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGTTTCTTTATTAAAGGAAGACAGCACCTTTATTCAAGAACTGTTTGTGAGGTTGAGATTATCAAGCACTTCTGCGGAATCTAAGAAAAATTTGgtaattgctacatgggaatacatttttttttatgggtttgttacatggggatacattgttatcatttttttattgttttagctatcgtgatggtaatgtg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggata