Sequence
atgc intronic sequence ATGC exonic sequenceGATTGGTTTGTGCTCAGGCTCACAGACAGGAACTGATACAAGATTTATACAAGACATGGCATGATCCTGTTCGTGGCACAGTTAGTGGTGGCATGATTCGgtataaggattcttctctatgttttatctggactttcctgtgtgtgtgcatgtgcatatttttatactgtatgtacattttttggttctagtatttagatttctttttcctcttgctttctatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: LOC_Os06g39640.1 (Oryza sativa), 5'ss of exon 15
GATTGGTTTGTGCTCAGGCTCACAGACAGGAACTGATACAAGATTTATACAAGACATGGCATGATCCTGTTCGTGGCACAGTTAGTGGTGGCATGATTCGgtataaggattcttctctatgttttatctggactttcctgtgtgtgtgcatgtgcatatttttatactgtat-gtacattttttggttctagtatttagatttctttttcctcttg-ctttctatgcag
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GATTGGTGTGTGCTCAGGCTCATCGGCAAGAGCTCATTCAAGATCTTTACAAGACATGGCATGATCCTCAAAGAGGCACCGTAACAGGAGGCATGATCAGgt---------cttttttgaggaacaatttgttcttccaaccaaaattaattgatgaagcctcctattaaatagtttagggttacctcctaccgattaacttatttttggttctggtcttgttgtgtag
upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA10G38770.1 (Glycine max), 5'ss of exon 16
GATTGGTTTGTGCTCAGGCTCACAGACAGGAACTGATACAAGATTTATACAAGACATGGCATGATCCTGTTCGTGGCACAGTTAGTGGTGGCATGATTCGgtataaggattcttctctatgttttatctggactttcctgtgtgtgtgcatgtgcatatttttatactgtatgtacattttttggttctagtatttagatttctttttcctcttgctttctatgcag
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GTTTAGTATGTGCTCAAGCTCATAGGCAGGAACTTATACAAGATTTGTACAAAACTTGGCAAGACCCTGTTCGTGGCACAGTTAGTGGTGGCATGATCCGgtactaataatatcaattttactatttt---aattctgaatattaattgttctaggttttttgatgattggtttcaattatattatatcttagtttataattttcatgtgtcct--tttatgtgcag
upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA20G28970.1 (Glycine max), 5'ss of exon 16
GATTGGTTTGTGCTCAGGCTCACAGACAGGAACTGATACAAGATTTATACAAGACATGGCATGATCCTGTTCGTGGCACAGTTAGTGGTGGCATGATTCGgta-taaggattcttctctatgtttta--tctggactttcctg--tgtgtgtgcatgtgc-atatttttatactgtatgtacattttttggttctagtatttagatttctttttcctcttgctttctatgcag
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GTTTGGTATGCGCCCAAGCTCATAGGCAGGAACTTATACAAGATTTGTACAAAACTTGGCAAGACCCTGTTCGTGGCACAGTTAGTGGTGGCATGATCCGgtactaataatatcttttactattttaattctgaatattaattgttctaggttgttgtgtgatgagtttcaattatat-tacattgt---attttagtttataattttcatgtgcc-----ctttttgtgcag
upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA02G00510.1 (Glycine max), 5'ss of exon 15
GATTGGTTTGTGCTCAGGCTCACAGACAGGAACTGATACAAGATTTATACAAGACATGGCATGATCCTGTTCGTGGCACAGTTAGTGGTGGCATGATTCGgtat---aaggattcttctctatgttttatctggactttcctgt-gtgtgtgcatgtgc-atatttttatactgtatgtacattttttggtt----ctagtatttagatttctttttcctcttgctttctatgcag
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GTTTAGTGTGTGCTCAAGCTCATAGACAGGAACTCATACAAGATTTGTACAAAATGTGGCACGACCCTGTTCGTGGCTTAGTCAGTGGTGGCATGATCCGgtattacaagaaatatgacctccttttt-tctaattctcaatgttgtttttggttgtgggacgatgggattttgacaatacaattttcactttcctcctgtatctaaatattgttttttgtatccttttt-tgcag
upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA10G00530.1 (Glycine max), 5'ss of exon 7
GATTGGTTTGTGCTCAGGCTCACAGACAGGAACTGATACAAGATTTATACAAGACATGGCATGATCCTGTTCGTGGCACAGTTAGTGGTGGCATGATTCGg---tataaggattct---tctctatgtttta--tctggac-tttcctgtgtgtgtgc-atgtgcatatttttatactgta-tgtacattttttggttctagtatttagatttctttttcctcttgctttctatgcag
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GTTTAGTGTGTGCTCAAGCTCATAGACAGGAACTCATACAAGATTTGTACAAAATGTGGCACGACCCTGTTCGTGGCTTAGTCAGTGGTGGTATGATCCGgtaatacaagaaatatgaactcctattttctaattcttaatgttgtttttggttgtgagatgatgggattttcacaatataattttcattttcc---tcctgtatctaaatattgttttttgt---ccttttttgcag
upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: AT5G43810.2 (Arabidopsis thaliana), 5'ss of exon 15
GATTGGTTTGTGCTCAGGCTCACAGACAGGAACTGATACAAGATTTATACAAGACATGGCATGATCCTGTTCGTGGCACAGTTAGTGGTGGCATGATTCGgtataaggattcttctctatgttttatctggactttcctgtgtgtgtgcatgtgcatatttttatactgtatgtacattttttggttctagtatttagatttctttttcctcttgctttctatgcag
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GTTTAGTTTGTGCTCAAGCTCACAGGCAAGAACTTATACAAGATTTGTATAAAACATGGCAAGATCCTGTTCGCGGTACTGTTAGTGGCGGTATGATCAGgtaataactcgcaatatttcggtttttgtag-tttgattttatcggtgtatctcaaggtttttttgct-----tgctttctacag------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37188618|gb|CF607967.1|CF607967EST: AAGACATGGCATGATCCTGTTCGTGGCACAGTTAGTGGTGGCATGATTCG GGATCTTTTGGTTTCCTTTCGGAAGGCGACAGGGCAGAAGCCACTAAGGAT
genomic: AAGACATGGCATGATCCTGTTCGTGGCACAGTTAGTGGTGGCATGATTCGgtataaggat ... ttctatgcagGGATCTTTTGGTTTCCTTTCGGAAGGCGACAGGGCAGAAGCCACTAAGGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATTGGTTTGTGCTCAGGCTCACAGACAGGAACTGATACAAGATTTATACAAGACATGGCATGATCCTGTTCGTGGCACAGTTAGTGGTGGCATGATTCGgtataaggattcttctctatgttttatctggactttcctgtgtgtgtgcatgtgcatatttttatactgtatgtacattttttggttctagtatttagatttctttttcctcttgctttctatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG