Sequence
atgc intronic sequence ATGC exonic sequenceGGATTCAGCCTAGTGCTTGTGCAGCACAAAGAAAAGGATTTCCTTGTTGCATTTGGGGGAACCAAAAAGGAGCCATCAAATGAGgttgaggatataaatttatatttgcagtttttcagaagcattagctgatattgttttatgttctgttacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g01740.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA17G02680.1 (Glycine max), 5'ss of exon 11
GGATTCAGCCTAGTGCTTGTGCAGCACAAAGAAAAGGATTTCCTTGTTGCATTTGGGGGAACCAAAAAGGAGCCATCAAATGAGgttgaggatataaatttatatttgcagtttttcagaagcattagctgatattgttttatgttctgttacag
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GGTTTCAGCATGGTACTCGTGCAGCACAAGGAAAAGGATTTTCTTGTTGCATTTGGGGGATCCAAAAAAGAGCCATCAAATCAGgtttgacagaaagtatgaagttaatatttgagttcattctttaacctttttcttcttgacctcaaat-cag
upper sequence: Vv05s0020g01740.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA15G10310.1 (Glycine max), 5'ss of exon 14
GGATTCAGCCTAGTGCTTGTGCAGCACAAAGAAAAGGATTTCCTTGTTGCATTTGGGGGAACCAAAAAGGAGCCATCAAATGAGg------ttgaggatataaattta-tatttgcagtttttcagaagcattagctgatattgttttatgttctgttacag
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GGTTTTAGCGTAGCACTTGTGCAACACAAGGATAAAGATTTCCTTGTTGCATTTGGGGGATCCAAAAAGGAGCCATCAAATCAGgtttgacttaaatgcatgaagttagtgtatgagttaattttatggaacttgtaacctttttcttcttgactgtattag
upper sequence: Vv05s0020g01740.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA07G38020.1 (Glycine max), 5'ss of exon 12
GGATTCAGCCTAGTGCTTGTGCAGCACAAAGAAAAGGATTTCCTTGTTGCATTTGGGGGAACCAAAAAGGAGCCATCAAATGAGgtt-----gaggatat-aaatttatatttgcagtttttcagaagcattagctgatattgttttatgttctgttacag
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GGTTTCAGCATGGTACTTGTGCAGCACAAGGAAAAAGATTTTCTTGTTGCATTTGGGGGATCCAAAAAAGAACCATCAAATCAGgtttggcagaaagtatgaagttaatatttgagttcattcttattgaacttttaacctttttcttcttgacctaacag
upper sequence: Vv05s0020g01740.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA13G28760.1 (Glycine max), 5'ss of exon 11
GGATTCAGCCTAGTGCTTGTGCAGCACAAAGAAAAGGATTTCCTTGTTGCATTTGGGGGAACCAAAAAGGAGCCATCAAATGAGgttgaggata-------taaatttatatttgcagt--ttttcagaagcattagctgatattgttttatgttctgttacag
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GGTTTTAGCCTAACACTCGTGCAACACAAGGATAAAGACTTCCTTGTTGCATTTGGGGGATCCAAAAAAGAGCCATCAAATCAGgtttgacataaatgcatgaagttggtgtatggattaattttatggaacttttaatctttttcttcttgactgtattag--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32250155|gb|CD715974.1|CD715974EST: AGGATTTCCTTGTTGCATTTGGGGGAACCAAAAAGGAGCCATCAAATGAG GTTGAAGTATTAATCAAGGAAAAGAATGAAGTATCCATAAGTCGGCGGTCT
genomic: AGGATTTCCTTGTTGCATTTGGGGGAACCAAAAAGGAGCCATCAAATGAGgttgaggata ... tctgttacagGTTGAAGTATTAATCAAGGAAAAGAATGAAGTATCCATAAGTCGGCGGTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGATTCAGCCTAGTGCTTGTGCAGCACAAAGAAAAGGATTTCCTTGTTGCATTTGGGGGAACCAAAAAGGAGCCATCAAATGAGgttgaggatataaatttatatttgcagtttttcagaagcattagctgatattgttttatgttctgttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG