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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAAACTTCAACAAGTATTCATATCATCAGGCCAAAAATATGGTGGCTTGGCTTTGGATTTGCACTGCAATCGATTTGGTCCTACTACCTTGTTCCAGgtttatgacctaattttgctactgttttcatgtccgcatgttcaaagcttcattttccttgttttttttttcagttaatttaaaggcttcagttttcttc...

Basic information

species Vitis vinifera
transcript Vv04s0044g00860.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0044g00860.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: LOC_Os02g54170.1 (Oryza sativa), 5'ss of exon 3
GGAGAAACTTCAACAAGTATTCATATCATCAGGCCAAAAATATGGTGGCTTGGCTTTGGATTTGCACTGCAATCGATTTGGTCCTACTACCTTGTTCCAGgtttatgacctaattttgctactgttttcatgtccgcatgttcaaagcttcattttccttgttttttttttcagttaatttaaaggcttcagttttcttc----
 ||||  ||||||||| ||||    |||||| |||||| ||||||||||||| |  ||||||| || || |||||||||||||| ||| | || || ||||| | |   |||    |     |||||        | |  | |||    | ||||    | |||      |||   || || ||   |  | |   ||      
TGAGAGGCTTCAACAAATATTTTCTTCATCAAGCCAAACATATGGTGGCTTGACACTGGATTTACATTGTAATCGATTTGGTCCAACTGCTTTATTTCAGgtctttttactatccctaaacttgtttatcaaagtgaaactacaag---ttatttctgct-tttgaaagctcaaaaaaattgaacattaaaatggactggatcc

upper sequence: Vv04s0044g00860.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA08G15560.1 (Glycine max), 5'ss of exon 13
GGAGAAACTTCAACAAGTATTCATATCATCAGGCCAAAAATATGGTGGCTTGGCTTTGGATTTGCACTGCAATCGATTTGGTCCTACTACCTTGTTCCAGgtttatgacctaattttgctactgttttcatgtccgcatgtt-caaagcttcattttccttgttttttttttcag---ttaatttaaaggcttcagttttcttc
 |||||||| ||| | || |||| | ||||||| |||   |||||||||||  || |||||||||| |||||||||||||| || ||  | ||||| |||||  ||||    | || || ||  |||| ||||   | |||| |    |  | | ||   ||||| |   ||      ||||  | | || | |  | | | | 
CGAGAAACTGCAAAAGGTGTTCACAGCATCAGGACAATCTTATGGTGGCTTAACTCTGGATTTGCATTGCAATCGATTTGGCCCAACATCATTGTTTCAGgt--atgatactactt-gcaaccattttgatgtttacttgtttctcttccccttgttttatgtttctaactttgaggtttaaaatgatggttgctctatacct-

upper sequence: Vv04s0044g00860.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: AT3G18730.1 (Arabidopsis thaliana), 5'ss of exon 11
GGAGAAACTTCAACAAGTATTCATATCATCAGGCCAAAAATATGGTGGCTTGGCTTTGGATTTGCACTGCAATCGATTTGGTCCTACTACCTTGTTCCAGgtttatgacctaatttt--gctactgt-tttcatgtccgcatgttcaaagcttcattttccttgttttttttttcagttaatttaaaggcttcagttttcttc
||||||| |  ||||| | ||    |||||| |||| |  |||||||  ||  ||||||||||||||||||||||||||||||| ||| | ||||| |||||  |  ||          ||||     |||||  |   ||||||   |  ||| | ||  ||  | |  |  ||  || |                      
GGAGAAATTGAAACAACTTTTTGCCTCATCAAGCCAGATGTATGGTGCTTTAACTTTGGATTTGCACTGCAATCGATTTGGTCCAACTGCTTTGTTTCAGgtacactactaggcccaaagctagaaaatttcacatattcatgtt---attttcgtattatttaatatactcctc--tttaccag------------------