Sequence
atgc intronic sequence ATGC exonic sequenceGTTTTTGACATTTCATCTCTGCAAATATTCTCTCCACATGAATTAGATTACTTGCTCTGTGGCCGTAGAGAATTGTGGAAGgtaatttcattttctatattttatttctgtagaaacaaatcatggttttctatattttattgttgtagaacaaatcattgtgaaaacatatatcatgttttttaaattatgtaacttccccattgttgaag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g03830.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA11G11490.2 (Glycine max), 5'ss of exon 13
GTTTTTGACATTTCATCTCTGCAAATATTCTCTCCACATGAATTAGATTACTTGCTCTGTGGCCGTAGAGAATTGTGGAAGgtaatttcattttctatattttatttctgtagaaacaaatcatggttttctatattttattgttgtagaacaa-atcattgtgaaaacatatatcatgttttttaaattatgtaacttccccattgttgaag
||||||||||| |||||| | ||||| || ||||| || ||| | ||||||||||| |||||||| |||||||||||||||||| | | ||| | |||| ||| | | | | | || || || ||| | ||| || | || | || || | || ||| | |
GTTTTTGACATCTCATCTTTACAAATTTTTTCTCCCCAAGAACTGGATTACTTGCTTTGTGGCCGGAGAGAATTGTGGAAGgtattcttttttgtgcaaaagtattactgctg---cttacaacaatattttaaatgttaccat----gaataatgtagttataaatttatttttctcttttctgcag-------------------------
upper sequence: Vv04s0023g03830.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA12G03640.1 (Glycine max), 5'ss of exon 13
GTTTTTGACATTTCATCTCTGCAAATATTCTCTCCACATGAATTAGATTACTTGCTCTGTGGCCGTAGAGAATTGTGGAAGgtaatttcattttctatattttatttctgtagaaacaaatcatggttttctatattttattgttgtagaacaaatcattgtgaaaacatatatcatgttttttaaattatgtaacttccccattgttgaag
||||||||||| |||||| | ||||| || ||||| || ||| | ||||||||||| || ||||| |||||||||||||||||| | | ||| |||| | | | | | | | | || || || ||| | || | | || | | | | || | | |
GTTTTTGACATCTCATCTTTACAAATTTTTTCTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAGgtattct---tttttatacaaaagtattactgctgcttacaacaatcttttagatgttaccat---ggataatgtagttataattttttttctcctatctgcag---------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110702937|gb|EE079346.1|EE079346EST: CTCCACATGAATTAGATTACTTGCTCTGTGGCCGTAGAGAATTGTGGAAG ATGGAGACACTTGTTGATCACATAAAGTTTGATCATGGATACACTGCCAAG
genomic: CTCCACATGAATTAGATTACTTGCTCTGTGGCCGTAGAGAATTGTGGAAGgtaatttcat ... attgttgaagATGGAGACACTTGTTGATCACATAAAGTTTGATCATGGATACACTGCCAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTTTTGACATTTCATCTCTGCAAATATTCTCTCCACATGAATTAGATTACTTGCTCTGTGGCCGTAGAGAATTGTGGAAGgtaatttcattttctatattttatttctgtagaaacaaatcatggttttctatattttattgttgtagaacaaatcattgtgaaaacatatatcatgttttttaaattatgtaacttccccattgttgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG