1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AAATGTTTTAGCAGAAGGTAATGTAGGTTCAGGAGGTGCACCAGCTGGCATAATATCACTGCTTTCGGGTCAAGAAGAGATGTTTGCCTTTCGCCGTGCAgtaagtgattctctctctcccccctccattacaagggaaaaaaaaacctttccacacactttcaatgcaatcacccaacttgtattttagatgggtccca...
species | Vitis vinifera |
transcript | Vv04s0008g05270.t01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TAATATCACTGCTTTCGGGTCAAGAAGAGATGTTTGCCTTTCGCCGTGCA GTCTCGCGCTTGATCGAAATGCAGACACCTTTATCCCTGGAAGGAGTTTGTEST: gi|30252321|gb|CB969872.1|CB969872
genomic: TAATATCACTGCTTTCGGGTCAAGAAGAGATGTTTGCCTTTCGCCGTGCAgtaagtgatt ... acttatgcagGTCTCGCGCTTGATCGAAATGCAGACACCTTTATACCTGGAAGGAGTTTGT
EST: TAATATCACTGCTTTCGGGTCAAGAAGAGATGTTTGCCTTTCGCCGTGCA GTCTCGCGCTTGATCGAAATGCAGACACCTTTATCCCTGGAAGGAGTTTGT
genomic: TAATATCACTGCTTTCGGGTCAAGAAGAGATGTTTGCCTTTCGCCGTGCAgtaagtgatt ... acttatgcagGTCTCGCGCTTGATCGAAATGCAGACACCTTTATACCTGGAAGGAGTTTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATGTTTTAGCAGAAGGTAATGTAGGTTCAGGAGGTGCACCAGCTGGCATAATATCACTGCTTTCGGGTCAAGAAGAGATGTTTGCCTTTCGCCGTGCAgtaagtgattctctctctcccccctccattacaagggaaaaaaaaacctttccacacactttcaatgcaatcacccaacttgtattttagatgggtccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctttcc