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ATATCCATACAGGAGGTATGATCGATCACCCAGGCGTTATAGAAGCCCACCAAGAGGAAGAACCCCTCCTAGgtacgtgattttcctaaacacctccaattccctttgttcttctggctttttggttgatactcacccaagtttcgtgaaatatggtatttgatgcaaaaca...
species | Vitis vinifera |
transcript | Vv04s0008g05090.t01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CGATCACCCAGGCGTTATAGAAGCCCACCAAGAGGAAGAACCCCTCCTAG ATACAGAGGCAGGAGAAGTAGGACGCGGAGTCCAAGTGCTTCACGTAGCCCEST: gi|352777330|gb|FQ473964.1|FQ473964
genomic: CGATCACCCAGGCGTTATAGAAGCCCACCAAGAGGAAGAACCCCTCCTAGgtacgtgatt ... acatttgcagATACAGAGGCAGGAGAAGTAGGACGCGGAGTCCAAGTGCTTCACGTAGCCC
EST: CGATCACCCAGGCGTTATAGAAGCCCACCAAGAGGAAGAACCCCTCCTAG ATACAGAGGCAGGAGAAGTAGGACGCGGAGTCCAAGTGCTTCACGTAGCCCEST: gi|110699467|gb|EE076501.1|EE076501
genomic: CGATCACCCAGGCGTTATAGAAGCCCACCAAGAGGAAGAACCCCTCCTAGgtacgtgatt ... acatttgcagATACAGAGGCAGGAGAAGTAGGACGCGGAGTCCAAGTGCTTCACGTAGCCC
EST: CGATCACCCAGGCGTTATAGAAGCCCACCAAGAGGAAGAACCCCTCCTAG ATACAGAGGCAGGAGAAGTAGGACGCGGAGTCCAAGTGCTTCACGTAGCCCEST: gi|26259583|gb|CA810646.1|CA810646
genomic: CGATCACCCAGGCGTTATAGAAGCCCACCAAGAGGAAGAACCCCTCCTAGgtacgtgatt ... acatttgcagATACAGAGGCAGGAGAAGTAGGACGCGGAGTCCAAGTGCTTCACGTAGCCC
EST: CGATCACCCAGGCGTTATAGAAGCCCACCAAGAGGAAGAACCCCTCCTAG ATACAGAGGCAGGAGAAGTAGGACGCGGAGTCCAAGTGCTTCACGTAGCCCEST: gi|30322280|gb|CD005542.1|CD005542
genomic: CGATCACCCAGGCGTTATAGAAGCCCACCAAGAGGAAGAACCCCTCCTAGgtacgtgatt ... acatttgcagATACAGAGGCAGGAGAAGTAGGACGCGGAGTCCAAGTGCTTCACGTAGCCC
EST: CGATCACCCAGGCGTTATAGAAGCCCACCAAGAGGAAGAACCCCTCCTAG ATACAGAGGCAGGAGAAGTAGGACGCGGAGTCCAAGTGCTTCACGTAGCCCEST: gi|22009451|gb|BQ794485.1|BQ794485
genomic: CGATCACCCAGGCGTTATAGAAGCCCACCAAGAGGAAGAACCCCTCCTAGgtacgtgatt ... acatttgcagATACAGAGGCAGGAGAAGTAGGACGCGGAGTCCAAGTGCTTCACGTAGCCC
EST: CGATCACCCAGGCGTTATAGAAGCCCACCAAGAGGAAGAACCCCTCCTAG ATACAGAGGCAGGAGAAGTAGGACGCGGAGTCCAAGTGCTTCACGTAGCCCEST: gi|352772301|gb|FQ469826.1|FQ469826
genomic: CGATCACCCAGGCGTTATAGAAGCCCACCAAGAGGAAGAACCCCTCCTAGgtacgtgatt ... acatttgcagATACAGAGGCAGGAGAAGTAGGACGCGGAGTCCAAGTGCTTCACGTAGCCC
EST: AAGAACCCCTCCTAG ATACAGAGGCAGGAGAAGTAGGACGCGGAGTCCAAGTGCTTCACGTAGCCCEST: gi|352765310|gb|FQ466007.1|FQ466007
genomic: AAGAACCCCTCCTAGgtacgtgatt ... acatttgcagATACAGAGGCAGGAGAAGTAGGACGCGGAGTCCAAGTGCTTCACGTAGCCC
EST: CGATCACCCAGGCGTTATAGAAGCCCACCAAGAGGAAGAACCCCTCCTAG ATACAGAGGCAGGAGAAGTAGGACGCGGAGTCCAAGTGCTTCACGTAGCCC
genomic: CGATCACCCAGGCGTTATAGAAGCCCACCAAGAGGAAGAACCCCTCCTAGgtacgtgatt ... acatttgcagATACAGAGGCAGGAGAAGTAGGACGCGGAGTCCAAGTGCTTCACGTAGCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATCCATACAGGAGGTATGATCGATCACCCAGGCGTTATAGAAGCCCACCAAGAGGAAGAACCCCTCCTAGgtacgtgattttcctaaacacctccaattccctttgttcttctggctttttggttgatactcacccaagtttcgtgaaatatggtatttgatgcaaaaca
- - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaaaac