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TATGCTTTTGTCAATAAGGGACTGCATGTAACATTCTACCTTTTGTAGTTATATGATACTGGGAGAGGCATCTATTGAAGCTTCAAGTCATTTTTTGAAGgtgagatgtgattctttgtccagcttgtttcagtttgctgtcttgttcacaaaaaaagtaagaatggctgatagtttagtatctatatcagttattgggt...
species | Vitis vinifera |
transcript | Vv04s0008g03170.t01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: ATATGATACTGGGAGAGGCATCTATTGAAGCTTCAAGTCATTTTTTGAAG GTGTGAATTGGGATGGCTTGTCTTGGCAACGATGCTGATGAATGTACAGCTEST: gi|33408006|gb|CF213633.1|CF213633
genomic: ATATGATACTGGGAGAGGCATCTATTGAAGCTTCAAGTCATTTTTTGAAGgtgagatgtg ... tggtttttagGTGTGAATTGGGATGGCTTGTCTTGGCAACGATGCTGATGAATGTACAGCT
EST: ATATGATACTGGGAGAGGCATCTATTGAAGCTTCAAGTCATTTTTTGAAG GTGTGAATTGGGATGGCTTGTCTTGGCAACGATGCTGATGAATGTACAGCTEST: gi|110396979|gb|EC962688.1|EC962688
genomic: ATATGATACTGGGAGAGGCATCTATTGAAGCTTCAAGTCATTTTTTGAAGgtgagatgtg ... tggtttttagGTGTGAATTGGGATGGCTTGTCTTGGCAACGATGCTGATGAATGTACAGCT
EST: ATATGATACTGGGAGAGGCATCTATTGAAGCTTCAAGTCATTTTTTGAAG GTGTGAATTGGGATGGCTTGTCTTGGCAACGATGCTGATGAATGTACAGCTEST: gi|33407921|gb|CF213548.1|CF213548
genomic: ATATGATACTGGGAGAGGCATCTATTGAAGCTTCAAGTCATTTTTTGAAGgtgagatgtg ... tggtttttagGTGTGAATTGGGATGGCTTGTCTTGGCAACGATGCTGATGAATGTACAGCT
EST: ATATGATACTGGGAGAGGCATCTATTGAAGCTTCAAGTCATTTTTTGAAG GTGTGAATTGGGATGGCTTGTCTTGGCAACGATGCTGATGAATGTACAGCT
genomic: ATATGATACTGGGAGAGGCATCTATTGAAGCTTCAAGTCATTTTTTGAAGgtgagatgtg ... tggtttttagGTGTGAATTGGGATGGCTTGTCTTGGCAACGATGCTGATGAATGTACAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATGCTTTTGTCAATAAGGGACTGCATGTAACATTCTACCTTTTGTAGTTATATGATACTGGGAGAGGCATCTATTGAAGCTTCAAGTCATTTTTTGAAGgtgagatgtgattctttgtccagcttgtttcagtttgctgtcttgttcacaaaaaaagtaagaatggctgatagtttagtatctatatcagttattgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaagaa