Sequence
atgc intronic sequence ATGC exonic sequenceGTACTGTCTTTTCCAACAAATCCTTAATCGGCGAACGAGTCTCTTCTTTAACCGGCATATTGATCAGATCATCCTCTGTTGTTTCTATGGGCTTGCAAAGgtttgctgttagaaacttgtgagagttattggttgttcaaccattttcttttaatccttctttgcccatgtttttgcctgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g02780.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA04G36700.2 (Glycine max), 5'ss of exon 13
GTACTGTCTTTTCCAACAAATCCTTAATCGGCGAACGAGTCTCTTCTTTAACCGGCATATTGATCAGATCATCCTCTGTTGTTTCTATGGGCTTGCAAAGgttt-gctgtt----agaaacttgtgagagttattggttgttcaaccattttcttttaatccttctttgcccatgtttttgcctgcag
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ATACTCTCTTTTCCAGCGGATCCTTAATCAGTGGACATCTCTCTTTTTCAACCGTCATATTGACCAAATCATCTTGTGTTGTTTCTATGGAGTTGCAAAGgtttcacttttgcttagaaacttttgagtgtaattgttt-ttctattattacctttttctcattctat---------tctgtgtgcag
upper sequence: Vv04s0008g02780.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA13G26170.1 (Glycine max), 5'ss of exon 13
GTACTGTCTTTTCCAACAAATCCTTAATCGGCGAACGAGTCTCTTCTTTAACCGGCATATTGATCAGATCATCCTCTGTTGTTTCTATGGGCTTGCAAAGgttt-gctgtt----agaaacttgtgagagttattggttgttcaaccattttcttttaatccttctttgcccatgtttttgcctgcag
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ATATTCTCTTTTCCAGCGGATCCTTAATCAGTGGACATCTCTCTTTTTCAACCGTCATATTGACCAAATCATCTTGTGTTGTTTCTATGGAGTTGCAAAGgtttcacttttgcttagaaacttttgagtgtaattgtttttcctactattacctttttctcattctat---tatgtgtgcag------
upper sequence: Vv04s0008g02780.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA15G36890.1 (Glycine max), 5'ss of exon 13
GTACTGTCTTTTCCAACAAATCCTTAATCGGCGAACGAGTCTCTTCTTTAACCGGCATATTGATCAGATCATCCTCTGTTGTTTCTATGGGCTTGCAAAGgttt-gctgttagaaacttgtgagagttattggttgttcaaccattttcttttaatccttctttgcccatgtttttgcctgcag
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ATACTGTCTTTTCCAGCGGATCCTAAATCAATGGACATCTCTCTTTTTCAACCATCATATTGACCAAATCATCTTGTGTTGTTTCTATGGAGTTGCAAAGgtttcgcttttgg---tttagaaactttagagtgtgatgtgcttttatattattaccttgttctcattctattctgttttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110710388|gb|EE086681.1|EE086681EST: ACCGGCATATTGATCAGATCATCCTCTGTTGTTTCTATGGGCTTGCAAAG ATCTCTCAAATGAACCTGACCTTCAGGGAAATAATTCACAACTACAGGAAG
genomic: ACCGGCATATTGATCAGATCATCCTCTGTTGTTTCTATGGGCTTGCAAAGgtttgctgtt ... ttgcctgcagATCTCTCAAATGAACCTGACCTTCAGGGAAATAATTCACAACTACAGGAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTACTGTCTTTTCCAACAAATCCTTAATCGGCGAACGAGTCTCTTCTTTAACCGGCATATTGATCAGATCATCCTCTGTTGTTTCTATGGGCTTGCAAAGgtttgctgttagaaacttgtgagagttattggttgttcaaccattttcttttaatccttctttgcccatgtttttgcctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG