Sequence
atgc intronic sequence ATGC exonic sequenceCCTGGAATTTGACAATCCTGAGCGACCTGAATGCAACAACCTTCTTACAATTTATCAGCTAATGTCAGGCAGGACAAAAGAGgtaaagtgaaattacatatggcctctttggtttttaatgcctatccctatgtcatattgctgttaccacatgcatatatgactttatgtttctttatttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g00200.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA04G09130.1 (Glycine max), 5'ss of exon 13
------------------CCTGGAATTTGACAATCCTGAGCGACCTGAATGCAACAACCTTCTTACAATTTATCAGCTAATGTCAGGCAGGACAAAAGAGgt--aaagtgaaattacatatggcctctttggtttttaatgcctatccctatgtcatattgctgttaccacatgcatatatgactttatgtttctttatttt
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TTATGACAAATCTTACAGTTTGGAATTTGACAACTCTGAGAGGCCTGAATGTAACAATCTTCTTTCCATATACCAGCTTATTTCAGGAAAGACAAAAGAGgtcagaaatgctatattatatgtgtgtgtgtgtgtattgcaattatgattctacttgatacccatttttatatgcag-------------------------
upper sequence: Vv04s0008g00200.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA04G09130.2 (Glycine max), 5'ss of exon 13
------------------CCTGGAATTTGACAATCCTGAGCGACCTGAATGCAACAACCTTCTTACAATTTATCAGCTAATGTCAGGCAGGACAAAAGAGgt--aaagtgaaattacatatggcctctttggtttttaatgcctatccctatgtcatattgctgttaccacatgcatatatgactttatgtttctttatttt
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TTATGACAAATCTTACAGTTTGGAATTTGACAACTCTGAGAGGCCTGAATGTAACAATCTTCTTTCCATATACCAGCTTATTTCAGGAAAGACAAAAGAGgtcagaaatgctatattatatgtgtgtgtgtgtgtattgcaattatgattctacttgatacccatttttatatgcag----gaagttgtgcag---------
upper sequence: Vv04s0008g00200.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: AT2G25840.2 (Arabidopsis thaliana), 5'ss of exon 11
CCTGGAATTTGACAATCCTGAGCGACCTGAATGCAACAACCTTCTTACAATTTATCAGCTAATGTCAGGCAGGACAAAAGAGgtaaagtgaaattacatatggcctc--tttggttttta---atgcctatccctatgtcatattgctgttaccaca-tg--catatatgactttat---gtttctttatttt-------------
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GCTTGAATTTGACAATGCTGAGAGACCTGAATGCAACAATCTCCTCTCAATATATCAGATTGTTTCAGGCAAGAAAAAAGAGgtatggagaaag-agataatgtttagatttgggtcacggagatgctttcacatgtctcttactcccttgactacaatgattacttaagatataatccggtgaccacatttttaatcggttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30133497|gb|CB918836.1|CB918836EST: GCAACAACCTTCTTACAATTTATCAGCTAATGTCAGGCAGGACAAAAGAG GAAGTTGCGCAGGAATGCCAAGGTATGAACTGGGGTGTGTTCAAGAGAATC
genomic: GCAACAACCTTCTTACAATTTATCAGCTAATGTCAGGCAGGACAAAAGAGgtaaagtgaa ... tgtactgcagGAAGTTGCGCAGGAATGCCAAGGTATGAACTGGGGTGTGTTCAAGAGAATC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCTGGAATTTGACAATCCTGAGCGACCTGAATGCAACAACCTTCTTACAATTTATCAGCTAATGTCAGGCAGGACAAAAGAGgtaaagtgaaattacatatggcctctttggtttttaatgcctatccctatgtcatattgctgttaccacatgcatatatgactttatgtttctttatttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctatccc