Sequence
atgc intronic sequence ATGC exonic sequenceGAATGGATTATGGAACAATGGGAGAAGAACTATTACATCAGTGCAATAGCAGGAGCTAATAATGGGAGCTCATTGGTGGTGATGTCCAAGGgtcagtgtgacttatttaaaaccaatcattttttgagacaatgacttcttttatgattgttatctgtctcttttaacctctgttaatttactgaatatag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g00160.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: LOC_Os01g54100.2 (Oryza sativa), 5'ss of exon 12
GAATGGATTATGGAACAATGGGAGAAGAACTATTACATCAGTGCAATAGCAGGAGCTAATAATGGGAGCTCATTGGTGGTGATGTCCAAGGgtcagtgtgacttatttaaaaccaatcattttttgagacaatgacttcttttatgattgttatctgtctcttttaacctctgttaatttactgaatatag
|||||||||||||| |||||||| | |||||| || || | |||| | || ||||| ||||||||||| || |||| |||||||| || ||| | | ||||| | || | ||| | || | | | |||| || || | ||||| | || ||| | || | |||
GAATGGATTATGGACCAATGGGAAAGGAACTACTATATAACTGCACTTGCTGGAGCAAATAATGGGAGTTCCCTGGTAGTGATGTCAAAAGgtaa-------ccagttaaagc--atgctgtttcagtgctatt-cctgtcttataatgtataaattattctttga--ctaacttagcatgcttttt-tag
upper sequence: Vv04s0008g00160.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GRMZM2G116151_T03 (Zea mays), 5'ss of exon 13
GAATGGATTATGGAACAATGGGAGAAGAACTATTACATCAGTGCAATAGCAGGAGCTAATAATGGGAGCTCATTGGTGGTGATGTCCAAGGgt----cagtgtgactta---tttaaaaccaatcattttttgagacaatgacttcttttatgattgttatctgtctcttttaacctctgttaatttactgaatatag
|||||||| |||||||||||||||||||||| || |||| ||| ||||||| || || ||||| || ||| ||||||| ||||| | ||| || || | || ||| || || | || || | ||| | | | || | ||| || || ||| | ||| | ||| | |
GAATGGATAATGGAACAATGGGAGAAGAACTTCTATATCACTGCGCTAGCAGGGGCAAACAATGGTAGTTCACTGGTGGTCATGTCGAGAGgtaatacaatggtgcctaggatttgtaa--aactacttcctgttaaaattgtgtaataattttttcgtgtctacctattgtaaaat-tgt--gtgtacaaagttc--
upper sequence: Vv04s0008g00160.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: AT2G25760.2 (Arabidopsis thaliana), 5'ss of exon 13
GAATGGATTATGGAACAATGGGAGAAGAACTATTACATCAGTGCAATAGCAGGAGCTAATAATGGGAGCTCATTGGTGGTGATGTCCAAGGgtcagtgtgacttatttaaaaccaatcattttttgagacaatgacttcttttatgattgttatctgtctcttttaacctctgttaatttactgaatatag
||||||||||||||||||||||| ||||| || || || | ||| | |||||||| |||| ||||| |||||| ||||| ||||| || ||| || ||| | ||| || ||| | | ||| || | | | | ||| | | | ||| ||| |
GAATGGATTATGGAACAATGGGAAAAGAATTACTATATTACAGCAGTGGCAGGAGCAAATAGTGGGAACTCATTCGTGGTTATGTCAAAAGgtattcttgttttactccttttgaatg--caggtgtaacagttatttccgttttatctctgtttcacagttttcatcatttgt--attcag---------
upper sequence: Vv04s0008g00160.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: PP1S66_174V6.1 (Physcomitrella patens), 5'ss of exon 13
GAATGGATTATGGAACAATGGGAGAAGAACTATTACATCAGTGCAATAGCAGGAGCTAATAATGGGAGCTCATTGGTGGTGATGTCCAAGGgt-----------cagtgtgactt-atttaaaaccaatc-attttttgagacaat------gacttct-----tttatgattgttatctgtctctttta-acctctgt-taatttactgaatatag------------------------------------------
|| ||||| |||||||| ||||| ||||| | || ||||||||||| || |||||||||||||||||||| ||||| || ||||| || ||| ||| | || || || | |||| ||||| ||| || | | | ||||| || | || |||| || | |||| | | | ||| ||| | | |
GAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCAATTGCTGGAGCTAATAATGGGAGCTCTTTGGTCGTCATGTCGAAAGgtattttattggatagtatcctttgatgtatattgaatctattttcagagttgatctcaagggtgtttgatgatttattcttataatttgtcatttggagacctttttgtggttttctggctcttgttttacttgttgcatgatgtctcacggtgtttatttctgtag
upper sequence: Vv04s0008g00160.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: EFJ31718 (Selaginella moellendorffii), 5'ss of exon 11
GAATGGATTATGGAACAATGGGAGAAGAACTATTACATCAGTGCAATAGCAGGAGCTAATAATGGGAGCTCATTGGTGGTGATGTCCAAGGgtcagtgtgact--tatttaaaaccaat--cattttttgagacaatgacttcttttatgattgttatctgtctcttttaacctctgttaatttactgaatatag
|| ||||| ||||||||||||||||| |||| ||||| ||||| || |||||||| || || || ||||| |||| || ||||| || ||| | ||| || |||| | ||| | |||| || ||| |||
GAGTGGATCATGGAACAATGGGAGAAAAACTTCTACATTAGTGCCATTGCAGGAGCCAACAACGGCAGCTCGCTGGTTGTCATGTCAAAAGgt-attgtcgctgttattgatggccactggcattgttgctgacgcgtgattcccccgcag--------------------------------------------
upper sequence: Vv04s0008g00160.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: EFJ38433 (Selaginella moellendorffii), 5'ss of exon 11
GAATGGATTATGGAACAATGGGAGAAGAACTATTACATCAGTGCAATAGCAGGAGCTAATAATGGGAGCTCATTGGTGGTGATGTCCAAGGgtcagtgtgact--tatttaaaaccaat--cattttttgagacaatgacttcttttatgattgttatctgtctcttttaacctctgttaatttactgaatatag
|| ||||| ||||||||||||||||| |||| ||||| ||||| || |||||||| || || || ||||| |||| || ||||| || ||| | ||| || |||| | ||| | |||| | ||| |||
GAGTGGATCATGGAACAATGGGAGAAAAACTTCTACATTAGTGCCATTGCAGGAGCCAACAACGGCAGCTCGCTGGTTGTCATGTCAAAAGgt-attgtcgctgttattgatggccactggcattgtcgctgacgcgtgtttcccccgcag--------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294965774|gb|GW839229.1|GW839229EST: TGCAATAGCAGGAGCTAATAACGGGAGCTCGTTGGTGGTGATGTCCAAGG GCACGCAATATTTACAGCAGTCCTATAAAGTCAGTGAGTCATTTCCATTTA
genomic: TGCAATAGCAGGAGCTAATAATGGGAGCTCATTGGTGGTGATGTCCAAGGgtcagtgtga ... ctgaatatagGCACGCAATATTTACAGCAGTCCTATAAAGTCAGTGAGTCATTTCCATTTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAATGGATTATGGAACAATGGGAGAAGAACTATTACATCAGTGCAATAGCAGGAGCTAATAATGGGAGCTCATTGGTGGTGATGTCCAAGGgtcagtgtgacttatttaaaaccaatcattttttgagacaatgacttcttttatgattgttatctgtctcttttaacctctgttaatttactgaatatag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG