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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTCATCTGGTTGAACTGAAGGGCTCAGGTGAACTCTATGCTATGAAGGCAATGGACAAGTCTGTGATGTTGAACCGCAACAAGgtctgacacttaatgaaaaccttgatttggggcattttatatttggtgtgaactctatgcacactcatgtgtttcttagttcctgcaacagagacattcattcaaccgcagtgatcaaatatgtgattgaaggatctaatgtcattgtgaaccatgtgcag

Basic information

species Vitis vinifera
transcript Vv03s0038g04210.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g04210.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: LOC_Os04g23890.1 (Oryza sativa), 5'ss of exon 13
TGTTCATCTGGTTGAACTGAAGGGCTCAGGTGAACTCTATGCTATGAAGGCAATGGACAAGTCTGTGATGTTGAACCGCAACAAGgtctgacacttaatgaaaaccttgatttggggcattttatatttggtgtgaactctatgcacactcatgtgtttcttagttcctgcaacagagacattcattcaaccgcagtgatcaaatatgtgattgaaggatctaatgtcattgtgaaccatgtgcag
||| ||  ||||||| ||  ||||    |||||| | | ||| |||||||| ||||||||||| |||||||||||||||||||||||   |   |||||      | |||    | ||||  | | | || ||| |  | |||   ||  ||||       |  |             || ||  | |  | |  |  |  |   ||  | |  ||| || || |   | |      |   |||||
TGTGCACTTGGTTGAGCTACAGGGAAGTGGTGAATTATTTGCAATGAAGGCCATGGACAAGTCAGTGATGTTGAACCGCAACAAGgt---aattttaat-----tcatgaacatgagcatgctgt-tatgttgtta-ttgtatttccatccatgctggatgtgatc-----------aacctttttcctgctgttgctagtacg-ataaggtgcaagaat-tacttcaactccctctctcttgcag

upper sequence: Vv03s0038g04210.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GRMZM2G032351_T01 (Zea mays), 5'ss of exon 12
TGTTCATCTGGTTGAACTGAAGGGCTCAGGTGAACTCTATGCTATGAAGGCAATGGACAAGTCTGTGATGTTGAACCGCAACAAGgtctgacactt--aatgaaaaccttgatttggggcattttatattt-ggtgtgaactctatgcacactcatgtgtttcttagttcctgcaacagagacattcattcaaccgcagtgatcaaatatgtgattgaaggatctaatgtcattgtgaaccatgtgcag
||| ||| |||| ||  || | ||    |||||| | | ||| ||||||||||||||||| || |||||||||||||||||||||||   |  ||   ||| ||     |||  ||  |  || ||| ||| | | |  |||  ||||  |   |  |  |  | |    |||| |  || |  | ||                                                             
TGTACATTTGGTGGAGTTGCAAGGAAGCGGTGAATTATTTGCAATGAAGGCAATGGACAAATCAGTGATGTTGAACCGCAACAAGgta-aattctagaaataaatgtaatgacatgcagtgttgtattttttgatatacacttcatgc-tatcaaactcctggtca--cactgctatggacaggtacaa------------------------------------------------------------

upper sequence: Vv03s0038g04210.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA16G19560.1 (Glycine max), 5'ss of exon 15
TGTTCATCTGGTTGAACTGAAGGGCTCAGGTGAACTCTATGCTATGAAGGCAATGGACAAGTCTGTGATGTTGAACCGCAACAAGgtctgacacttaatgaaaaccttgatttggggcattttatatttggtgtgaactctatgcacactcatgtgtttcttagttcctgcaacagagacattcattcaaccgcagtgatcaaatatgtgattgaaggatctaatgtcattgtgaaccatgtgcag
||||||| |||| ||||| || ||  | |||||||| ||||| |||||||||||||| |||||||||||| | || || || ||||||||  |  |    ||  |  |  |||      ||  | ||||  |||| |||        |||  ||   ||     ||           || ||  ||||    | | |                                                 
TGTTCATTTGGTGGAACTCAAAGGTACTGGTGAACTATATGCAATGAAGGCAATGGAAAAGTCTGTGATGCTAAATCGTAATAAGgtctgg-atatgtaaaagtcactagtttct--tcttaaagattttatgtgcacttctcatcaactattgaaattaaggatttt---------gatatatattctctagtaat-------------------------------------------------