Sequence
atgc intronic sequence ATGC exonic sequenceTCCTATTCTGAGAAAGCGCATGGACGAAGTTATGGGAAACTTTTTGCGAGAAGGCCTTGAACCGTCAGAGACAATGATTGGGCACATTATTGAAATGGAGgtatgatgaaatcaaaatatttaatcattctgaactgttgacatttgcagtattctagttgaaaataaaaactattgcaagtaattgtataaactcacct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA13G32940.1 (Glycine max), 5'ss of exon 12
TCCTATTCTGAGAAAGCGCATGGACGAAGTTATGGGAAACTTTTTGCGAGAAGGCCTTGAACCGTCAGAGACAATGATTGGGCACATTATTGAAATGGAGgtatgatgaaatcaaaatatttaatcattctgaactgttgacatttgcagtattctagttgaaaataaaaactattgcaagtaattgtataaactcacct----
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CCCTTTCTTGCGGAAGCGCATGGATGAAGTTATAGGGAACTTTCTACGAGAAGGCCTTGAACCCTCAGAGAACATGATTGCGCACCTCATAGAAATGGAGgtat--tgcactaaaatgagtttacctattttgcttgtt--tagttgcctgagtatggcttggggtgctgtcttatcagaacattggtgaacagtctctcttca
upper sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA15G06380.1 (Glycine max), 5'ss of exon 12
TCCTATTCTGAGAAAGCGCATGGACGAAGTTATGGGAAACTTTTTGCGAGAAGGCCTTGAACCGTCAGAGACAATGATTGGGCACATTATTGAAATGGAGgtatg-atgaaatcaaaatattt-aatcattctgaactgttgacatttgcagtattctagttgaaaataaaaactattgcaagtaattgtataaactcacct
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CCCTTTCTTGCGGAAGCGCATGGATGAAGTTATAGGGAACTTTCTACGAGAAGGCCTTGAACCCTCAGAGAACATGATTGCACACCTCATAGAAATGGAGgtatgcaccaaaagagctcatcagaatttggttcttgtgcctaaacttg-gtttctcgagtcatgcccaaattgtgttttgagatataaccaaatttctag-
upper sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA08G07160.1 (Glycine max), 5'ss of exon 12
TCCTATTCTGAGAAAGCGCATGGACGAAGTTATGGGAAACTTTTTGCGAGAAGGCCTTGAACCGTCAGAGACAATGATTGGGCACATTATTGAAATGGAGgtatgatgaaatcaaaatatttaatcattctgaactgttgacatttgc--agtattctagttgaaaataaaaactattgcaagtaattgt--ataaactcacct--
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CCCTTTCTTGAGAAAGCGCATGGATGAAGTTATTGGGAACTTTTTACGAGAAGGCCTAGAACCCTCGGAGACTATGATAACACACGTCATAGAAATGGAGgtatgctgagatttggcttatttgatattttaag-tataaatgtatgcttgctcctcctactgcaatta-----tgttaaaagtagatgctgaaaaatatagttga
upper sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA07G30150.1 (Glycine max), 5'ss of exon 12
TCCTATTCTGAGAAAGCGCATGGACGAAGTTATGGGAAACTTTTTGCGAGAAGGCCTTGAACCGTCAGAGACAATGATTGGGCACATTATTGAAATGGAGgtatgatgaaatcaaaat-atttaatcattctgaactgttgacatttgc--agtattctagttgaaaataaaaactattgcaagtaattgt--ataaactcacct
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CCCTTTCTTGAGAAAGTGCATGGATGAAGTTCTTGGGAACTTTTTACGAGAAGGCCTAGAACCCTCGGAGACTATGATAACACACGTCATAGAAATGGAGgtatgctgagatttggcttatttgatatttttaaagtataaatgtatacttgctcctcctactgcaatta-----tgttaaaagcagatgctgaaaaatatagtt
upper sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: AT2G14120.3 (Arabidopsis thaliana), 5'ss of exon 13
TCCTATTCTGAGAAAGCGCATGGACGAAGTTATGGGAAACTTTTTGCGAGAAGGCCTTGAACCGTCAGAGACAATGATTGGGCACATTATTGAAATGGAGgtatg-atgaa-atcaaaatatttaatcattctgaactgttgacatttgcagtattctagttgaaaataaaaactattgcaagtaattgtataaactcacct
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TCCAGTCCTGCAAAAGCGCATGGATGAGGTTATTGGGAACTTTCTGCGAGAAGGTCTTGAACCTTCGCAGGCAATGATCCGAGATCTTATTGAAATGGAGgtatgtatggataatttaagatccacacaatcatgaatctaatggccagtattattaaatttacttagattgcgtactg--atttttttttttgtcacactgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122689415|gb|EC938921.1|EC938921EST: AAGGCCTTGAACCGTCAGAGACAATGATTGGGCACATTATTGAAATGGAG ATGGACTACATAAATACTTCACACCCAAATTTTATTGGTGGAAGTAAAGCT
genomic: AAGGCCTTGAACCGTCAGAGACAATGATTGGGCACATTATTGAAATGGAGgtatgatgaa ... tattctgtagATGGACTACATAAATACTTCACACCCAAATTTTATTGGTGGAAGTAAAGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCTATTCTGAGAAAGCGCATGGACGAAGTTATGGGAAACTTTTTGCGAGAAGGCCTTGAACCGTCAGAGACAATGATTGGGCACATTATTGAAATGGAGgtatgatgaaatcaaaatatttaatcattctgaactgttgacatttgcagtattctagttgaaaataaaaactattgcaagtaattgtataaactcacct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataa