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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGTGGCATTCTTCATCATACTGTCCATCATTTTCGCGTATCTATCTGCCAACCGTCAGAATAATTAAGgtaagtcttatttgagtagaaaccaatgatttctctttatcagactcctgcaccacaccagtaaaatacacaatcacattgcttcaaaaaaattccccaaaaaagaaggaaaaaaagaaaggagagatattctaactggtttcatttctgcaaaatcaactttctcaaatttcctgtag

Basic information

species Vitis vinifera
transcript Vv03s0038g00450.t01
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34546606|gb|CF514838.1|CF514838
EST:     ACTGTCCATCATTTTCGCGTACCTATCTGCCAACCGTCAGAATAATTAAG                         GTATTAATGGATGGGTACAAAACTGCATGGTTTCTACCGAGGATCTTCCGT
genomic: ACTGTCCATCATTTTCGCGTATCTATCTGCCAACCGTCAGAATAATTAAGgtaagtctta ... tttcctgtagGTATTAATGGATGGGTACAAAACTGCATGGTTTCTACCGAGGATCTTCCGT
EST: gi|351015968|gb|FQ431923.1|FQ431923
EST:     ACTGTCCATCATTTTCGCGTATCTATCTGCCAACCGTCAGAATAATTAAG                         GTATTAATGGATGGGTACAAAACTGCATGGTTTCTACCGAGGATCTTCCGT
genomic: ACTGTCCATCATTTTCGCGTATCTATCTGCCAACCGTCAGAATAATTAAGgtaagtctta ... tttcctgtagGTATTAATGGATGGGTACAAAACTGCATGGTTTCTACCGAGGATCTTCCGT
EST: gi|110388094|gb|EC952811.1|EC952811
EST:     ACTGTCCATCATTTTCGCGTACCTATCTGCCAACCGTCAGAATAATTAAG                         GTATTAATGGATGGGTACAAAACTGCATGGTTTCTACCGAGGATCTTCCGT
genomic: ACTGTCCATCATTTTCGCGTATCTATCTGCCAACCGTCAGAATAATTAAGgtaagtctta ... tttcctgtagGTATTAATGGATGGGTACAAAACTGCATGGTTTCTACCGAGGATCTTCCGT
EST: gi|33405379|gb|CF211006.1|CF211006
EST:     ACTGTCCATCATTTTCGCGTACCTATCTGCCAACCGTCCGAATAATTAAG                         GTATTAATGGATGGGTACAAAACTGCATGGTTTCTACCGAGGATCTTCCGT
genomic: ACTGTCCATCATTTTCGCGTATCTATCTGCCAACCGTCAGAATAATTAAGgtaagtctta ... tttcctgtagGTATTAATGGATGGGTACAAAACTGCATGGTTTCTACCGAGGATCTTCCGT
EST: gi|110395541|gb|EC961207.1|EC961207
EST:     ACTGTCCATCATTTTCGCGTACCTATCTGCCAACCGTCAGAATAATTAAG                         GTATTAATGGATGGGTACAAAACTGCATGGTTTCTACCGAGGATCTTCCGT
genomic: ACTGTCCATCATTTTCGCGTATCTATCTGCCAACCGTCAGAATAATTAAGgtaagtctta ... tttcctgtagGTATTAATGGATGGGTACAAAACTGCATGGTTTCTACCGAGGATCTTCCGT
EST: gi|110381131|gb|EC946449.1|EC946449
EST:     ACTGTCCATCATTTTCGCGTACCTATCTGCCAACCGTCAGAATAATTAAG                         GTATTAATGGATGGGTACAAAACTGCATGGTTTCTACCGAGGATCTTCCGT
genomic: ACTGTCCATCATTTTCGCGTATCTATCTGCCAACCGTCAGAATAATTAAGgtaagtctta ... tttcctgtagGTATTAATGGATGGGTACAAAACTGCATGGTTTCTACCGAGGATCTTCCGT
EST: gi|110716961|gb|EE092399.1|EE092399
EST:     ACTGTCCATCATTTTCGCGTATCTATCTGCCAACCGTCAGAATAATTAAG                         GTATTAATGGATGGGTACAAAACTGCATGGTTTCTACCGAGGATCTTCCGT
genomic: ACTGTCCATCATTTTCGCGTATCTATCTGCCAACCGTCAGAATAATTAAGgtaagtctta ... tttcctgtagGTATTAATGGATGGGTACAAAACTGCATGGTTTCTACCGAGGATCTTCCGT
EST: gi|349815130|gb|FQ410353.1|FQ410353
EST:     ACTGTCCCTCATTTTCGCGTATCTTTCTGCCCACCGTCAGAATAATTAAG                         GTATTAATGGATGGGTACAAA-CTGCATGGTTTCTA
genomic: ACTGTCCATCATTTTCGCGTATCTATCTGCCAACCGTCAGAATAATTAAGgtaagtctta ... tttcctgtagGTATTAATGGATGGGTACAAAACTGCATGGTTTCTA
EST: gi|33403079|gb|CF208706.1|CF208706
EST:     ACTGTCCATCATTTTCGCGTACCTATCTGCCAACCGTCAGAATAATTAAG                         GTATTAATGGATGGGTACAAAACTGCATGGTTTCTACCGAGGATCTTCCGT
genomic: ACTGTCCATCATTTTCGCGTATCTATCTGCCAACCGTCAGAATAATTAAGgtaagtctta ... tttcctgtagGTATTAATGGATGGGTACAAAACTGCATGGTTTCTACCGAGGATCTTCCGT
EST: gi|110729518|gb|EE105539.1|EE105539
EST:     ACTGTCCATCATTTTCGCGTACCTATCTGCCCAC-GTCAGAATAATTAAG                         -TATTAATGGA
genomic: ACTGTCCATCATTTTCGCGTATCTATCTGCCAACCGTCAGAATAATTAAGgtaagtctta ... tttcctgtagGTATTAATGGA
EST: gi|34362609|gb|CF404194.1|CF404194
EST:     ACTGTCCATCATTTTCGCGTACCTATCTGCCAACCGTCAGAATAATTAAG                         GTATTAATGGATGGGTACAAAACTGCATGGTTTCTACCGAGGATCTTCCGT
genomic: ACTGTCCATCATTTTCGCGTATCTATCTGCCAACCGTCAGAATAATTAAGgtaagtctta ... tttcctgtagGTATTAATGGATGGGTACAAAACTGCATGGTTTCTACCGAGGATCTTCCGT