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TTGGATCAGAAATCTGGTAGGAGGTATTCTAGGGCAACATCTAATTCCAAGCCCACAAGCAATTATTCTTCTGCAAAACCACATGCTGCTTTTGTCACAGgtagtgtgtcattttgatatttaaattttatagctgatatacttaagattggatttgataccccttttagttctattgctaaatgacgatgtgatcttga...
species | Vitis vinifera |
transcript | Vv02s0033g01110.t01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GCCCACAAGCAATTATTCTTCTGCAAAACCACATGCTGCTTTTGTCACAG GTGTTCAACGCAAGCTGGAAATGAATAATCAGEST: gi|34543467|gb|CF511699.1|CF511699
genomic: GCCCACAAGCAATTATTCTTCTGCAAAACCACATGCTGCTTTTGTCACAGgtagtgtgtc ... attcttacagGTGTTCAACGCAAGCTGGAAATGAATAATCAG
EST: GCCCACAAGCAATTATTCTTCTGCAAAACCACATGCTGCTTTTGTCACAG GTGTTCAACGCAAGCTGGAAATGAATAATCAGEST: gi|33404620|gb|CF210247.1|CF210247
genomic: GCCCACAAGCAATTATTCTTCTGCAAAACCACATGCTGCTTTTGTCACAGgtagtgtgtc ... attcttacagGTGTTCAACGCAAGCTGGAAATGAATAATCAG
EST: GCCCACAAGCAATTATTCTTCTGCAAAACCACATGCTGCTTTTGTCACAG NTGTTCAACGCEST: gi|110366174|gb|EC929904.1|EC929904
genomic: GCCCACAAGCAATTATTCTTCTGCAAAACCACATGCTGCTTTTGTCACAGgtagtgtgtc ... attcttacagGTGTTCAACGC
EST: GCCCACAAGCAATTATTCTTCTGCAAAACCACATGCTGCTTTTGTCACAG GTGTTCAACGCAAGCTGGAAATGAATAATCAGEST: gi|110396778|gb|EC962478.1|EC962478
genomic: GCCCACAAGCAATTATTCTTCTGCAAAACCACATGCTGCTTTTGTCACAGgtagtgtgtc ... attcttacagGTGTTCAACGCAAGCTGGAAATGAATAATCAG
EST: GCCCACAAGCAATTATTCTTCTGCAAAACCACATGCTGCTTTTGTCACAG GTGTTCAACGCAAGCTGGAAATGAATAATCAG
genomic: GCCCACAAGCAATTATTCTTCTGCAAAACCACATGCTGCTTTTGTCACAGgtagtgtgtc ... attcttacagGTGTTCAACGCAAGCTGGAAATGAATAATCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGATCAGAAATCTGGTAGGAGGTATTCTAGGGCAACATCTAATTCCAAGCCCACAAGCAATTATTCTTCTGCAAAACCACATGCTGCTTTTGTCACAGgtagtgtgtcattttgatatttaaattttatagctgatatacttaagattggatttgataccccttttagttctattgctaaatgacgatgtgatcttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT