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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTCTCATCACATATGTGGCACTGAACTTGATGGATGGGCATGGCCAACCGGCACTCCTATACATCGTGCCATTCACACTGGgtaattctctgtcacaggcagcaaatgcaacccgattgaactgcaaaaccgattacatcttgcaattagcttatcatgaattcacacactgatgcag

Basic information

species Vitis vinifera
transcript Vv02s0025g03400.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g03400.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: LOC_Os06g51430.1 (Oryza sativa), 5'ss of exon 13
GTCTTCTCATCACATATGTGGCACTGAACTTGATGGATGGGCATGGCCAACCGGCACTCCTATACATCGTGCCATTCACACTGGgtaattctctgtcacaggcagcaaatgcaacccgattgaactgcaaaaccgattacatcttgcaattagcttatcatgaat-tcacacactgatgcag
| || || || |||||||| ||  ||||| | ||||| || ||||||||||| ||||| || ||||| ||||| |||||||| |||||||  ||  |      | |  ||    |||  | || |   |  |  | |||    ||| | | | ||  | ||  || ||   ||         
GACTCCTTATTACATATGTCGCCTTGAACCTTATGGACGGACATGGCCAACCTGCACTTCTCTACATAGTGCCCTTCACACTTGgtaattaactacc-----taacctatctctccccctggagcctaatga--gtttatggattgaactaacctctttatatatgtctgtcag--------

upper sequence: Vv02s0025g03400.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GRMZM2G165351_T03 (Zea mays), 5'ss of exon 11
GTCTTCTCATCACATATGTGGCACTGAACTTGATGGATGGGCATGGCCAACCGGCACTCCTATACATCGTGCCATTCACACTGGgtaattctctgtcacaggcagcaaatgcaacccgattgaactgcaaaaccgattacatcttgcaattagcttatcatgaattcacacactgatgcag
| ||||| ||||||||||| || |||||| |||||||||||||||| ||||| || ||  | ||||||||||| ||||| || ||||||  | |||     |   |   |     |||  |  |||||   |  |  | | |  |    || |   |                        
GACTTCTAATCACATATGTTGCGCTGAACCTGATGGATGGGCATGGACAACCTGCCCTTTTGTACATCGTGCCCTTCACTCTTGgtaatgatgtgtgttttgagactcgtctcgtccg--tacactgcctgat-gtgtgctttgttttgttggtacag-----------------------

upper sequence: Vv02s0025g03400.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GRMZM2G096343_T01 (Zea mays), 5'ss of exon 13
GTCTTCTCATCACATATGTGGCACTGAACTTGATGGATGGGCATGGCCAACCGGCACTCCTATACATCGTGCCATTCACACTGGgtaatt---ctctgtcacaggcagcaaatgcaacccg---attgaactgcaaaaccgattacatcttgcaattagcttatcatgaattcacacactgatgcag------------------------------------
|||| || || ||||| || ||  ||||| | |||||||| |||||||| ||||| ||||| ||||||||||| |||||| | ||||| |     ||| | | | |   |    | | |     ||  |   | |   |     |  ||||     ||| ||    |   ||       |  |   |                                    
GTCTCCTAATTACATACGTTGCCTTGAACCTTATGGATGGCCATGGCCAGCCGGCTCTCCTTTACATCGTGCCTTTCACAATCGgtaagtgatgcctgcccctgacgatagtatctatctatgtatgtaggagtatttcatgccatgtcttctggataggttcctgtttttttgttttgttctattgttttgtttgttttaacaaaataccaaatttgtgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110358368|gb|EC922530.1|EC922530
EST:     GGATGGGCATGGCCAACCGGCACTCCTATACATCGTGCCATTCACACTGG                         GAACCTTTTTGACACTGGGGAGGAAGAGAGGCGATCTCAAGAACTTATGGA
genomic: GGATGGGCATGGCCAACCGGCACTCCTATACATCGTGCCATTCACACTGGgtaattctct ... actgatgcagGAACCTTTTTGACACTGGGGAGGAAGAGAGGCGATCTCAAGAACCTATGGA
EST: gi|71882067|gb|DT031122.1|DT031122
EST:     GGATGGGCATGGCCAACCGGCACTCCTATACATCGTGCCATTCACACTGG                         GAACCTTTTTGACACTGGGGAGGAAGAGAGGCGATCTCAAGAACTTATGGA
genomic: GGATGGGCATGGCCAACCGGCACTCCTATACATCGTGCCATTCACACTGGgtaattctct ... actgatgcagGAACCTTTTTGACACTGGGGAGGAAGAGAGGCGATCTCAAGAACCTATGGA
EST: gi|30129909|gb|CB915248.1|CB915248
EST:     GGATGGGCATGGCCAACCGGCACTCCTATACATCGTGCCATTCACACTGG                         GAACCTTTTTGACACTGGGGAGGAAGAGAGGCGATCTCAAGAACCTATGGA
genomic: GGATGGGCATGGCCAACCGGCACTCCTATACATCGTGCCATTCACACTGGgtaattctct ... actgatgcagGAACCTTTTTGACACTGGGGAGGAAGAGAGGCGATCTCAAGAACCTATGGA
EST: gi|71885798|gb|DT034853.1|DT034853
EST:     GGATGGGCATGGCCAACCGGCACTCCTATACATCGTGCCATTCACACTGG                         GAACCTTTTTGACACTGGGGAGGAAGAGAGGCGATCTCAAGAACTTATGGA
genomic: GGATGGGCATGGCCAACCGGCACTCCTATACATCGTGCCATTCACACTGGgtaattctct ... actgatgcagGAACCTTTTTGACACTGGGGAGGAAGAGAGGCGATCTCAAGAACCTATGGA
EST: gi|32245741|gb|CD711560.1|CD711560
EST:     GGATGGGCATGGCCAACCGGCACTCCTATACATCGTGCCATTCACACTAG                         GAACCTTTTTGACACTGGGGAGGAAGAGAGGCGATCTCAAGAACCTATGGA
genomic: GGATGGGCATGGCCAACCGGCACTCCTATACATCGTGCCATTCACACTGGgtaattctct ... actgatgcagGAACCTTTTTGACACTGGGGAGGAAGAGAGGCGATCTCAAGAACCTATGGA
EST: gi|110362845|gb|EC926402.1|EC926402
EST:     GGATGGGCATGGCCAACCGGCACTCCTATACATCGTGCCATTCACACTGG                         GAACCTTTTTGACACTGGGGAGGAAGAGAGGCGATCTCAAGAACTTATGGA
genomic: GGATGGGCATGGCCAACCGGCACTCCTATACATCGTGCCATTCACACTGGgtaattctct ... actgatgcagGAACCTTTTTGACACTGGGGAGGAAGAGAGGCGATCTCAAGAACCTATGGA
EST: gi|110421268|gb|EC987564.1|EC987564
EST:     GGATGGGCATGGCCAACCGGCACTCCTATACATCGTACCATTCACACTGG                         GAACCTTTTTGACACTGGGGAGGAAGAGAGGCGATCTCAAGAACCTATGGA
genomic: GGATGGGCATGGCCAACCGGCACTCCTATACATCGTGCCATTCACACTGGgtaattctct ... actgatgcagGAACCTTTTTGACACTGGGGAGGAAGAGAGGCGATCTCAAGAACCTATGGA
EST: gi|110418598|gb|EC984758.1|EC984758
EST:     GGATGGGCATGGCCAACCGGCACTCCTATACATCGTACCATTCACACTGG                         GAACCTTTTTGACACTGGGGAGGAAGAGAGGCGATCTCAAGAACCTATGGA
genomic: GGATGGGCATGGCCAACCGGCACTCCTATACATCGTGCCATTCACACTGGgtaattctct ... actgatgcagGAACCTTTTTGACACTGGGGAGGAAGAGAGGCGATCTCAAGAACCTATGGA
EST: gi|32246367|gb|CD712186.1|CD712186
EST:     GGATGGGCATGGCCAACCGGCACTCCTATACATCGTGCCATTCACACTAG                         GAACCTTTTTGACACTGGGGAGGAAGAGAGGCGATCTCAAGAACCTATGGA
genomic: GGATGGGCATGGCCAACCGGCACTCCTATACATCGTGCCATTCACACTGGgtaattctct ... actgatgcagGAACCTTTTTGACACTGGGGAGGAAGAGAGGCGATCTCAAGAACCTATGGA
EST: gi|110687575|gb|EE065143.1|EE065143
EST:     GGATGGGCATGGCCAACCGGCACTCCTATACATCGTGCCATTCACACTGG                         GAACCTTTTTGACACTGGGGAGGAAGAGAGGCGATCTCAAGAACTTATGGA
genomic: GGATGGGCATGGCCAACCGGCACTCCTATACATCGTGCCATTCACACTGGgtaattctct ... actgatgcagGAACCTTTTTGACACTGGGGAGGAAGAGAGGCGATCTCAAGAACCTATGGA