1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CTGTGTTGAATTTCAAGTTGCCTTTCCTACACACTGAAGCCTTAGTTACAATTGTTGCCTGCCTGGAGATTATTCGTCGTGGCATATGGAATTTCTTCAGgtattttcatccatttaggcatcaaagtttctaaaatctcttaccaattacaaccaaacctggctctataaacacattacttccgtgggtctacacgacgctaagagttaacttcttctgcttctaatgatttgctatatatgttgttatgtttatcag
species | Vitis vinifera |
transcript | Vv01s0182g00130.t01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: ATTGTTGCCTGCCTGGAGATTATTCGTCGTGGCATATGGAATTTCTTCAG AATAGAGAATGAGCATTTGAACAATGTCGGCAAGTATCGTGCATTCAAGTCEST: gi|352763396|gb|FQ471708.1|FQ471708
genomic: ATTGTTGCCTGCCTGGAGATTATTCGTCGTGGCATATGGAATTTCTTCAGgtattttcat ... tgtttatcagAATAGAGAATGAGCATTTGAACAATGTCGGCAAGTATCGTGCATTCAAGTC
EST: ATTGTTGCCTGCCTGGAGATTTTTCGTCGTGGCATATGGAATTTCTTCAG AATAGAGAATGAGCATTTGAACAATGTCGGCAAGTTTCGTGCATTCAAGTCEST: gi|122691546|gb|EC980014.1|EC980014
genomic: ATTGTTGCCTGCCTGGAGATTATTCGTCGTGGCATATGGAATTTCTTCAGgtattttcat ... tgtttatcagAATAGAGAATGAGCATTTGAACAATGTCGGCAAGTATCGTGCATTCAAGTC
EST: ATTGTTGCCTGCCTGGAGATTATTCGTCGTGGCATATGGAATTTCTTCAG AATAGAGAATGAGCATTTGAACAATGTCGGCAAGTATCGTGCATTCAAGTCEST: gi|122691939|gb|EC985593.1|EC985593
genomic: ATTGTTGCCTGCCTGGAGATTATTCGTCGTGGCATATGGAATTTCTTCAGgtattttcat ... tgtttatcagAATAGAGAATGAGCATTTGAACAATGTCGGCAAGTATCGTGCATTCAAGTC
EST: ATTGTTGCCTGCCTGGAGATTATTCGTCGTGGCATATGGAATTTCTTCAG AATAGAGAATGAGCATTTGAACAATGTCGGCAAGTATCGTGCATTCAAGTC
genomic: ATTGTTGCCTGCCTGGAGATTATTCGTCGTGGCATATGGAATTTCTTCAGgtattttcat ... tgtttatcagAATAGAGAATGAGCATTTGAACAATGTCGGCAAGTATCGTGCATTCAAGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTGTTGAATTTCAAGTTGCCTTTCCTACACACTGAAGCCTTAGTTACAATTGTTGCCTGCCTGGAGATTATTCGTCGTGGCATATGGAATTTCTTCAGgtattttcatccatttaggcatcaaagtttctaaaatctcttaccaattacaaccaaacctggctctataaacacattacttccgtgggtctacacgacgctaagagttaacttcttctgcttctaatgatttgctatatatgttgttatgtttatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT