Sequence
atgc intronic sequence ATGC exonic sequenceAGTGAACCTGTTGACATCAACAATAAAGGTTGATGCTGATCAGTCAGATCTCAGGTTTTGTTTCAGGATTATTTCTCCAACGAAGAACTATACTTTGCAGgtaaatcttacagcttaggttgcactcatgaagttcagtttacttctttgaaattatttgatacctgaaactgtatttttgcttgatggttctgtgaaatactgatggaatggtgaattgttaagtgttattattgatttttttctcactagtgctcattaatgttgtacatttgcttgtcagcacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GRMZM5G872204_T02 (Zea mays), 5'ss of exon 13
AGTGAACCTGTTGACATCAACAATAAAGGTTGATGCTGATCAGTCAGATCTCAGGTTTTGTTTCAGGATTATTTCTCCAACGAAGAACTATACTTTGCAGgtaaatcttacagcttaggttgcactcatgaagttcagtttacttctttgaaattatttgatacctgaaactg-tatttttgcttgatggttctgtgaaatactgatggaatggtgaattgttaagtgttattattgatttttttctcactagtgctcattaatgttgtacatttgcttgtcagcacag
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TGTAAATTTGTTGACATCGACCATTAAAGTTGATGCTGAGCAATCAGATTTGAGGTTCTGTTTCAGAATTATTTCACCCACAAAGATCTACACATTGCAGgtatagcacaagtttatggtctgtcatattgaatatgatcaagacttcca----tacttcatgaacatatctgctatttatacag--------------------------------------------------------------------------------------------------------
upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GRMZM2G093670_T01 (Zea mays), 5'ss of exon 4
AGTGAACCTGTTGACATCAACAATAAAGGTTGATGCTGATCAGTCAGATCTCAGGTTTTGTTTCAGGATTATTTCTCCAACGAAGAACTATACTTTGCAGgtaaatcttacagcttaggttgcactcatgaagttcagtttacttctttgaaattatttgatacctgaaactgtatttttgcttgatggttctgtgaaatactgatggaatggtgaattgttaagtgttattattgatttttttctcactagtgctcattaatgttgtacatttgcttgtcagcacag
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TGTAAATTTATTGACATCAACCATTAAAGTTGATGCTGAACAATCAGATCTGAGGTTCTGCTTCAGAATTTTTTCACCCACAAAAATCTACACATTGCAGgtacaccacat-gtttatggtgcagtct----gccttattgattctgattaagat-ttcaatact-----ccatgaacacatctgctatttatgcag-------------------------------------------------------------------------------------------
upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA08G28890.2 (Glycine max), 5'ss of exon 13
AGTGAACCTGTTGACATCAACAATAAAGGTTGATGCTGATCAGTCAGATCTCAGGTTTTGTTTCAGGATTATTTCTCCAACGAAGAACTATACTTTGCAGgtaaatcttacagcttaggttgcactcatgaagttcagtttacttctttgaaattatttgatacctgaaactgtatttttgcttgatggttctgtgaaatactgatggaatggtgaattgttaagtgttattattgatttttttctcactagtgctcattaatgttgtacatttgcttgtcagcacag
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TGTGAACTTGCTTACATCAACAATTAAAGTAGATGCTGACCAATCAGATTTGAGGTTTTGCTTCCGGATCATTTCACCAACCAAGAACTATACTTTGCAGgtta--tttaatgtgttctttagatttttttaattca------tacatggatggtgattaaagctttata--gtttcattccttaattatgcttgtcagtgcag------------------------------------------------------------------------------------
upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA18G51810.1 (Glycine max), 5'ss of exon 13
AGTGAACCTGTTGACATCAACAATAAAGGTTGATGCTGATCAGTCAGATCTCAGGTTTTGTTTCAGGATTATTTCTCCAACGAAGAACTATACTTTGCAGgtaaatcttacagcttaggttgcactcatgaagttcagtttacttctttgaaattatttgatacctgaaactgtatttttgcttgatggttctgtgaaatactgatggaatggtgaattgttaagtgttattattgatttttttctcactagtgctcattaatgttgtacatttgcttgtcagcacag
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TGTGAACTTGCTTACATCAACAATTAAAGTAGATGCTGACCAATCAGATTTGAGGTTTTGCTTCCGGATCATTTCACCTACAAAGAACTACACTTTGCAGgtta--tttaatgtgttttttggatttttt---tttaattca-tacaaggatggtgattaaagctttata--gtttcattccttaattatgcttgtcagtgcag------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110724222|gb|EE099871.1|EE099871EST: TCAGGTTTTGTTTCAGGATTATTTCTCCAACGAAGAACTATACTTTGCAG GCAGAGAGTGCACTGGACCAAATGGATTGGATTGAAAAGATAACAGGGGTT
genomic: TCAGGTTTTGTTTCAGGATTATTTCTCCAACGAAGAACTATACTTTGCAGgtaaatctta ... gtcagcacagGCAGAGAGTGCACTGGACCAAATGGATTGGATTGAAAAGATAACAGGGGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGTGAACCTGTTGACATCAACAATAAAGGTTGATGCTGATCAGTCAGATCTCAGGTTTTGTTTCAGGATTATTTCTCCAACGAAGAACTATACTTTGCAGgtaaatcttacagcttaggttgcactcatgaagttcagtttacttctttgaaattatttgatacctgaaactgtatttttgcttgatggttctgtgaaatactgatggaatggtgaattgttaagtgttattattgatttttttctcactagtgctcattaatgttgtacatttgcttgtcagcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC