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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGCCCATGAGAAAATTGGAGTCGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAGgtaaatcatcttcagaaaacttttctactacatttttatttatataaatgttttgtaatgaaaagatctatgaaatagaatactggattaaccgctatgtttttatag

Basic information

species Vitis vinifera
transcript Vv01s0137g00770.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0137g00770.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA05G30830.1 (Glycine max), 5'ss of exon 13
CCTGCCCATGAGAAAATTGGAGTCGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAGgtaaatcatcttcagaaaacttttctactacatttttatttatataaatgttttgtaatgaaaagatctatgaaatagaatactggattaaccgctatgtttttatag
||||||||||||||||||||||| || |||||||| |||||  ||||||||| ||||||||| || ||||| ||||||| |  | |||    |   || ||  || ||||          ||||  ||| || | | |    | |||   ||  ||| || ||      || || |||| |||
CCTGCCCATGAGAAAATTGGAGTTGTTGATTCTCAGTGGATTATTCATCAAAGTGTTCCCTCACTAGGGAATCAGgtaatttgttttccatgattattactgttagattt----------aaatagttt-tactcatattgccgatg---taagata-tgtatgtttttctttgcttttgtag

upper sequence: Vv01s0137g00770.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA08G14040.1 (Glycine max), 5'ss of exon 13
CCTGCCCATGAGAAAATTGGAGTCGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAGgtaaatcatcttcagaaaacttttctactacatttttatttatataaatgttttgtaatgaaaagatctatgaaatagaatactggattaaccgctatgtttttatag
|||||||| |||||||||||||| || |||||||| |||||  ||||||||| ||||||||| || ||||| ||||||| |  | |||    |   || ||  || |||            |||  ||| || | | |    | |||   ||  ||| || ||      || || |||| |||
CCTGCCCACGAGAAAATTGGAGTTGTTGATTCTCAGTGGATTATTCATCAAAGTGTTCCCTCACTAGGGAATCAGgtaatttgttttccatgattattactgttagattc-----------aatagttt-tactcatatagccgatg---taagata-tgtatgtttttctttgcttttgtag

upper sequence: Vv01s0137g00770.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA18G01710.1 (Glycine max), 5'ss of exon 13
CCTGCCCATGAGAAAATTGGAGTCGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAGgtaaatcatct-tcagaaaacttttctactacatttttatttatataaatgttttgtaatgaaaagatctatgaaatagaatactggattaaccgctatgtttttatag
|||||||||||||| |||||||| || |||||||| ||||| ||||| |||  | ||||||| || ||||| ||||||  |  | | |||  |    | |  |||  |  |||  |||   |||  | | |   | |     | ||||      |||| |          |  | | |||  ||
CCTGCCCATGAGAAGATTGGAGTTGTTGATTCTCAGTGGATTGTTCACCAAGGTCTTCCCTCACTAGGGAATCAGgtactttgtttgtcatgatttctctagacttgacattt--ttactcaaaaatctggctgtaa-----tttatgcttattaatatt----------ccttttctttgcag

upper sequence: Vv01s0137g00770.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: AT1G67850.2 (Arabidopsis thaliana), 5'ss of exon 13
CCTGCCCATGAGAAAATTGGAGTCGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAGgtaaatcatcttcagaaaacttttctactacatttttatttatataaatgttttgtaatgaaaagatctatgaaatagaatactggattaaccgctatgtttttatag
||||| |||||||| || ||||| || |||||||||||| ||||||||||| || |||| || ||||| ||||| |||||||  |   ||||  || |     | |||||| | || |        |  | |||   |   | | |    |    ||                          
CCTGCACATGAGAAGATAGGAGTAGTTGATTCTCAATGGGTCGTTCATCAATCTTTTCCTTCCCTTGGCAACCAAgtaaatc--ccatagaactctctctatgtccattttaacttcttct----ctcagaaatctgattctttttcgcttgatgtag-------------------------

upper sequence: Vv01s0137g00770.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: AT3G26440.4 (Arabidopsis thaliana), 5'ss of exon 12
CCTGCCCATGAGAAAATTGGAGTCGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAGgtaaatcatcttcagaaaacttttctactacattt-------ttatttatataaatgttttgtaatgaaaagatctatgaaatagaatactggattaaccgctatgtttttatag
||||| |||||||| ||||| || || ||||||||||||||| |||||||||   |||| ||  | || | |||||| | | |       ||   | |  | ||| | |        |||||||      | |||  | ||      | |||||| ||    |     ||  |  | |  |         
CCTGCACATGAGAAGATTGGTGTTGTGGATTCTCAATGGATCATTCATCAAAAGATTCCTTCTTTAGGCAGCCAGgttattaaatgatcaaactttatcttcctatactcaactacattatttactagcttctttgttcatagttttaactatgagatgatctctcaaatacattgatcag---------