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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCAAAATGCTATTGAATATTTAAAAATCATTGGGGCTTTAGACGAGAATGAAAATTTGACTGTTTTAGgtgtgtaaagttgtttccatgtttcctaatgcattctggtgctcataactgatgcaatgtataactttttcattcctcatgtcctctaactaacattggcag

Basic information

species Vitis vinifera
transcript Vv01s0011g04360.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g04360.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA20G25800.1 (Glycine max), 5'ss of exon 16
GTTCAAAATGCTATTGAATATTTAAAAATCATTGGGGCTTTAGACGAGAATGAAAATTTGACTGTTTTAGgtgtgtaaagttgtttccatgtttcctaatgcattctggt-gctcataactgatgcaatgtataactttttcattcctcatgtcctctaactaacattggcag
|| |||||||||||||||||||||||||| ||||||||||| || ||| |||||||| | ||| || |||||  ||  | |   ||| |    ||||     |||  | |      |  ||  || ||||   ||   ||  |||      | |||  || | |||       
GTACAAAATGCTATTGAATATTTAAAAATAATTGGGGCTTTGGATGAGGATGAAAATCTCACTATTCTAGgttggttga-tcccttctag---tcctggaaaatttggcttatcttttcctcttgaaatgatgaagacttgtatttg----ggccttcaattgacag------

upper sequence: Vv01s0011g04360.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA09G18490.1 (Glycine max), 5'ss of exon 8
GTTCAAAATGCTATTGAATATTTAAAAATCATTGGGGCTTTAGACGAGAATGAAAATTTGACTGTTTTAGgtgtgtaaagttgtttccatgtttcctaatgcattctggtgctcataactgatgcaatgtataactttttcattcctcatgtcctctaactaacattggcag
|| ||||| || ||||||||||||||||  ||||| ||||| || |||||||| ||| ||||| || |||||  ||  |    | |||  |  |   |||    | |  || | ||      |  || ||||||      || |  |   |||    || | |||       
GTGCAAAAAGCAATTGAATATTTAAAAACAATTGGAGCTTTGGATGAGAATGAGAATCTGACTATTCTAGgttggttgaccattatccg-gcatgaaaatctgct-tactgattattttccttataaagtataaagcc--caatagttg-gtctgtcaattgacag------