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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAAAATCGCTTCAACCCACGGATACACAATGGGATTAAAACTAGAGCAGTTTATATTTGATGCATTTCCATATGCCCCTTCAACTGCACTTTATGAGgtgatttttctctctcactttgacccagcaatttattttcccatctcacttgattttaatctcacttgaaaatttctctgcgccaatattcag

Basic information

species Vitis vinifera
transcript Vv01s0011g01420.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g01420.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA05G26240.2 (Glycine max), 5'ss of exon 13
GAAGAAAATCGCTTCAACCCACGGATACACAATGGGATTAAAACTAGAGCAGTTTATATTTGATGCATTTCCATATGCCCCTTCAACTGCACTTTATGAGgtgatttttctctctcactttgacccagcaatttattttcccatctcacttgattttaatctcacttgaaaatttc----tctgcgccaatattcag----
|||||||||  |||| |  || ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||| |||||||||||| |||||||| | |  | ||| | || ||   |  |  || ||   ||  |  | |||     | | |   ||       ||    | |      || |||      
GAAGAAAATACCTTCCATACATGGATATACAATGGGATTAAAACTTGAACAGTTTATATTTGATGCATTTCCATATGCTCCTACAACTGCACTTTTTGAGgtgaatataat-tctaaattggattaaatatctttttggtcctccaaatttggaccaagtttgctttaggtccctcaaattttaaagtgattttcttagtc

upper sequence: Vv01s0011g01420.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA08G09170.2 (Glycine max), 5'ss of exon 14
GAAGAAAATCGCTTCAACCCACGGATACACAATGGGATTAAAACTAGAGCAGTTTATATTTGATGCATTTCCATATGCCCCTTCAACTGCACTTTATGAGgtgatttttctctctcactttgacccagcaatttattttcccatctcacttgattttaatctcacttgaaaattt---ctctgcgccaatattcag-----------------------------------------------------------------------------------------------------
|||||||||  |||| |  || ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||| | |||||||||| |||||||| | |  | ||| | || |    |  |  || ||   || ||  | |||   | | | |   ||      |     | |      || |||                                                                                                       
GAAGAAAATACCTTCCATACATGGATATACAATGGGATTAAAACTTGAACAGTTTATATTTGATGCATTTCCATATGCTCCTACGACTGCACTTTTTGAGgtgactataat-tctaaattggcttaaatatctttttggtccttcaaatttggactaagtttgcttttgtccctcaaattttaaattgattttcttttcctgatttggaaatagtctacacttgatccttaatttgtgatctctttagtccctaataaagaccaaaagcgagctactcattatgcatccatgttcag

upper sequence: Vv01s0011g01420.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: AT1G31070.2 (Arabidopsis thaliana), 5'ss of exon 13
GAAGAAAATCGCTTCAACCCACGGATACACAATGGGATTAAAACTAGAGCAGTTTATATTTGATGCATTTCCATATGCCCCTTCAACTGCACTTTATGAGgtgatttttctctctcactttgacccagcaatttattttcccatctcacttgattttaatctcacttgaaaatttctctgcgccaatattcag
|||||| ||  | || |   | ||||||||||||||| |||||||||| || || || |||||| | ||||| ||||| |||||||| ||||||| ||||||    | ||  | ||| ||| ||    |||| || |  |  |    ||   || ||||    |||   |||||    || || | | |  ||
GAAGAAGATACCATCTATGAATGGATACACAATGGGACTAAAACTAGAACAATTCATTTTTGATTCGTTTCCTTATGCTCCTTCAACCGCACTTTTTGAGgtatagtatcaat-tcatttttac---acaatatactaactaaagaaaccaaatattaaaa--actgagaaattgggttgtgcta-tgtgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30134049|gb|CB919387.1|CB919387
EST:     AGTTTATATTTGATGCATTTCCATATGCCCCTTCAACTGCACTTTATGAG                         GTATTGCGTGAAGAAGAGTTTGCACCAGTAAAGAACGCCAATGGGTCAAAC
genomic: AGTTTATATTTGATGCATTTCCATATGCCCCTTCAACTGCACTTTATGAGgtgatttttc ... caatattcagGTATTGCGTGAAGAAGAGTTTGCACCAGTAAAGAACGCCAATGGGTCAAAC