1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GACAGACCTCTTACATTCTGCAGAATCTCATTATAAGAAAGgttgagctctagatagtatttttcatagcaatgattttttaccaaaaattctggctcagtttaattattgtttttcttctggtctttttag
species | Vitis vinifera |
transcript | Vv01s0011g00500.t01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: ATTCTGCAGAATCTCATTATAAGAAAG CCAAGTATTTGCTGCTGGAAAGGAAGGGAATCATCAGTGTTATTATGCATAEST: gi|71878342|gb|DT027397.1|DT027397
genomic: ATTCTGCAGAATCTCATTATAAGAAAGgttgagctct ... gtctttttagCCAAGTATTTGCTGCTGGAAAGGAAGGGAATCATCAGTGTTATTATGCATA
EST: GACAGACCTCTTACATTCTGCAGAATCTCATTATAAGAAAG CCAAGTATTTGCTGCTGGAAAGGAAGGGAATCATCAGTGTTATTATGCATAEST: gi|33407255|gb|CF212882.1|CF212882
genomic: GACAGACCTCTTACATTCTGCAGAATCTCATTATAAGAAAGgttgagctct ... gtctttttagCCAAGTATTTGCTGCTGGAAAGGAAGGGAATCATCAGTGTTATTATGCATA
EST: GACAGACCTCTTACATTCTGCAGAATCTCATTATAAGAAAG CCAAGTATTTGCTGCTGGAAAGGAAGGGAATCATCAGTGTTATTATGCATAEST: gi|71878071|gb|DT027126.1|DT027126
genomic: GACAGACCTCTTACATTCTGCAGAATCTCATTATAAGAAAGgttgagctct ... gtctttttagCCAAGTATTTGCTGCTGGAAAGGAAGGGAATCATCAGTGTTATTATGCATA
EST: GACAGACCTCTTACATTCTGCAGAATCTCATTATAAGAAAG CCAAGTATTTGCTGCTGGAAAGGAAGGGAATCATCAGTGTTATTATGCATAEST: gi|71879077|gb|DT028132.1|DT028132
genomic: GACAGACCTCTTACATTCTGCAGAATCTCATTATAAGAAAGgttgagctct ... gtctttttagCCAAGTATTTGCTGCTGGAAAGGAAGGGAATCATCAGTGTTATTATGCATA
EST: GACAGACCTCTTACATTCTGCAGAATCTCATTATAAGAAAG CCAAGTATTTGCTGCTGGAAAGGAAGGGAATCATCAGTGTTATTATGCATA
genomic: GACAGACCTCTTACATTCTGCAGAATCTCATTATAAGAAAGgttgagctct ... gtctttttagCCAAGTATTTGCTGCTGGAAAGGAAGGGAATCATCAGTGTTATTATGCATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACAGACCTCTTACATTCTGCAGAATCTCATTATAAGAAAGgttgagctctagatagtatttttcatagcaatgattttttaccaaaaattctggctcagtttaattattgtttttcttctggtctttttag
- - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - AAGAAA