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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCCACCAGTATCACCATTGCCATCCCCAGGTAACTCAGCCATTTCAAGGAGAAAACCAATGCCACGGATGCCACTATTACCACCACTGCCAACCTCAGgtaaatcaagcttttcaatacaagtaccaacttgccaataaattcatatacaatcatctctcttatgccttgcagctttccatctctgatatccattttagttataatggcttcctatgtctttaatcattcag

Basic information

species Vitis vinifera
transcript Vv01s0010g00920.t01
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349815420|gb|FQ400575.1|FQ400575
EST:     GAGAAAACCAATGCCACGGATGCCACTATTACCACCACTGCCAACCTCAA                         GTATTCGACCAATCTGG-CTTTAGTTCAGT
genomic: GAGAAAACCAATGCCACGGATGCCACTATTACCACCACTGCCAACCTCAGgtaaatcaag ... aatcattcagGTATTCGACCAAT-TGGGCTTTAGTTCAGT
EST: gi|28962708|gb|CB341741.1|CB341741
EST:     GAGAAAACCAATGCCACGGATGCCACTATTACCACCACTGCCAACCTCAG                         GTATTCGACCAATTGGGCTTTAGTTCAGTGGAGGGAGTTATCCAGCTCTAT
genomic: GAGAAAACCAATGCCACGGATGCCACTATTACCACCACTGCCAACCTCAGgtaaatcaag ... aatcattcagGTATTCGACCAATTGGGCTTTAGTTCAGTGGAGGGAGTTATCCAGCTCTAT