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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTTTATCGATCAGATTTCTTTCCTGGACTCGGATGGATGCTGTCTAAATCTATATGGGATGAGCTATCACCAAAGTGGCCAAAAGCATATCCTTTATGgtctaaattaattttttgtgcatctaataaaaaatagttttaattagtcctacaaattttctttgacaaaacttcacttactgggatgattggttgag

Basic information

species Vitis vinifera
transcript Vv00s0585g00030.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0585g00030.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA06G00230.1 (Glycine max), 5'ss of exon 13
---CACTTTATCGATCAGATTTCTTTCCTGGACTCGGATGGATGCTGTCTAAATCTATATGGGATGAGCTATCACCAAAGTGGCCAAAAGCATATCCTTTATGgtcta--aattaattttttgtgcatctaataaaaaatagttttaattagtccta-caaattttctttgacaaaacttcacttactgggatgattggttgag
    ||||||||| ||||| |||||||||||| | |||||||||||| | | ||||| ||||||||||||||||||||| ||||||||||||||||||| ||  |  |   ||| || ||| |||  | | ||      |  ||   | || ||| |  ||       |||  |||| |  | |||     || |         
ATGAACTTTATCGCTCAGACTTCTTTCCTGGATTAGGATGGATGCTGGCCAGATCTACATGGGATGAGCTATCACCAAAATGGCCAAAAGCatatccttaatatttcattcattcatgttt-gtgtctgtcatttttgtttattgggagtattccgaataaggaactcttggtaaaaat--atttatcat-ataa---------

upper sequence: Vv00s0585g00030.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA04G00200.1 (Glycine max), 5'ss of exon 13
---CACTTTATCGATCAGATTTCTTTCCTGGACTCGGATGGATGCTGTCTAAATCTATATGGGATGAGCTATCACCAAAGTGGCCAAAAGCATATCCTTTATGgtctaaat-taattttttgtgcatctaataaaaaatagttttaattagtccta-caaattttctttgacaaaacttcacttactgggatgattggttgag
    ||||||||| || || |||||||||||| | |||||||||||| | | ||||| |||| |||||||||||||||| ||||| ||||||||||||| ||  |  | |  |  || ||||||  |   |||     |  ||   | || ||| |  || |     ||| ||||| |  | |||     || |         
ATGAACTTTATCGCTCTGACTTCTTTCCTGGATTAGGATGGATGCTGGCCAGATCTACATGGAATGAGCTATCACCAAAATGGCCTAAAGCatatccttaatatttcatacattcttgtttgtgtctgccatatttgtttattgggagtattccaaataagtaactcttggcaaaaat--atttatcat-ataa---------

upper sequence: Vv00s0585g00030.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: AT4G38240.3 (Arabidopsis thaliana), 5'ss of exon 13
---CACTTTATCGATCAGATTTCTTTCCTGGACTCGGATGGATGCTGTCTAAATCTATATGGGATGAGCTATCACCAAAGTGGCCAAAAGCATATCCTT-TATGgtct-------------------------aaattaattttttgtgcat-ctaataaaaaatagttttaattagtcctacaaattttctttgacaaaacttcacttactgggatgattggttgag
   | || || ||||||||||| |||||||| || || ||||||||    | ||| |  ||||||||| ||||||||||||||||||| |||||||||| |||| | |                         |  || |   ||  |  || |||| |||||| |   ||      | ||| | | |||  || |||||  | ||||||||||||||||||| ||||
ATGCGCTATACCGATCAGATTTTTTTCCTGGCCTTGGGTGGATGCTCAAGAGATCGACTTGGGATGAGTTATCACCAAAgtggccaaaggcatatccttatatgcttttttttctttcaatctcgatgactatagtttgacgcttcttaaattctaaaaaaaaaaatagtttgacgtttcta-agacttttcttaacaaatatccacttactgggatgattggctgag

upper sequence: Vv00s0585g00030.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: AT4G38240.1 (Arabidopsis thaliana), 5'ss of exon 13
---CACTTTATCGATCAGATTTCTTTCCTGGACTCGGATGGATGCTGTCTAAATCTATATGGGATGAGCTATCACCAAAGTGGCCAAAAGCATATCCTT-TATGgtctaaa----ttaattttttgtgcatctaataaaaaatagttttaattagtcctacaaattttctttgacaaaacttc-acttactgggatgattggttgag
   | || || ||||||||||| |||||||| || || ||||||||    | ||| |  ||||||||| ||||||||||||||||||| |||||||||| |||| | |       || | | |   ||  | || |   |      || ||||      | |||  |  ||||||    ||   ||||      |  | |       
ATGCGCTATACCGATCAGATTTTTTTCCTGGCCTTGGGTGGATGCTCAAGAGATCGACTTGGGATGAGTTATCACCAAAGTGGCCAAAGGCatatccttatatgcttttttttctttcaatctcgatgactatagtttgacgcttcttaaattctaaaaaaaaaaatagtttgacgtttctaagacttttcttaacaaatatccac-