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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAGGCTGGTAAAGTGGCTGATGTTTTCTACTGCCTCAAGCTCTTGGAAGCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaattttttcccttgtttcttccgttgtaatttcaacaactgtcttctcattcctttcacaatgtttctacttgcgtgaaacctttcatgttactgata...

Basic information

species Vitis vinifera
transcript Vv00s0225g00130.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0225g00130.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: LOC_Os07g01760.1 (Oryza sativa), 5'ss of exon 11
AAAAGGCTGGTAAAGTGGCTGATGTTTTCTACTGCCTCAAGCTCTTGGAAGCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaattttttcccttgtttcttccgttgtaatttcaaca----actgtcttctcattcctttcacaatgtttctacttgcgtgaaacctttcatgttactgata
||| |||||| |||| ||| |||||||||||||||||||||||  | ||||| |||||||| |||||||| || || ||||| || ||||| |||||||||||  | ||||||||   | | |   ||||  |||||      |    | ||  |   || |||    |     |||   | | | |      | |   |    
AAAGGGCTGGCAAAGCGGCCGATGTTTTCTACTGCCTCAAGCTTCTTGAAGCAACTGGAATATCCACTGTTCCAGGGTCAGGTTTCGGACAAAAAGAAGGgtaggtgtttcccttacatatacatatgtatcttcaaagtttcataaacatcagagatctctcaactagacatgactcaggagtacctgaatttatcctt----

upper sequence: Vv00s0225g00130.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GRMZM5G840582_T03 (Zea mays), 5'ss of exon 12
AAAAGGCTGGTAAAGTGGCTGATGTTTTCTACTGCCTCAAGCTCTTGGAAGCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaattttttcccttgtttcttccgttgtaatttcaacaactgtcttctcattcctttca-caatgtttctacttgcgtgaaacctttcatgttactgata
| |  || || ||||  || || ||||||||||||||||||||| |||| || || || ||||||||||| || || || || ||||| ||||| |||||||| | | |     || |  |     ||   | ||    | ||     | |    ||  |   |||  | || ||  |    | |                
AGAGAGCCGGCAAAGCAGCAGACGTTTTCTACTGCCTCAAGCTCCTGGAGGCAACGGGGATTTCCACTGTTCCGGGATCTGGTTTTGGGCAGAAGGAAGGgta-tgtgtatatatgatgatgataatgagttatctgtgagtgctggatgaagttttgaagtgatgggtttatttatgaatgaacacag------------

upper sequence: Vv00s0225g00130.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: PP1S215_28V6.1 (Physcomitrella patens), 5'ss of exon 12
AAAAGGCTGGTAAAGTGGCTGATGTTTTCTACTGCCTCAAGCTCTTGGAAGCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaattttttcccttgtttcttccgttgtaatttcaacaactgtcttctcattcctttcacaatgtttctacttgcgtgaaacctttcatgttactgata----
| || || || ||||   |||| || ||||| ||| |   ||| |||||||| ||||||||||| ||||| || |||||||||||||| |||||||| |||||  | ||   ||||   ||| | || |  ||  |  |           |        | ||            |    ||| | |||    |    ||    
AGAAAGCAGGGAAAGCTCCTGACGTCTTCTATTGCTTGCGGCTTTTGGAAGCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatctt---cttgaa-cttgcattctgtttctatgagaaaaagaaaaaaaagaagaagaaaagaaaagaaaacagataacttatcagacgatgtctaccat

upper sequence: Vv00s0225g00130.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: PP1S64_220V6.1 (Physcomitrella patens), 5'ss of exon 12
AAAAGGCTGGTAAAGTGGCTGATGTTTTCTACTGCCTCAAGCTCTTGGAAGCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaattttttcc-cttgtttcttccgttgtaatt-tcaaca---actgtcttctcattcctttcacaatgtttctacttgcgtgaaacctttcatgttactgata------------------------------------------------------------
   | || || ||||   ||||||| || |||||| | | |||  | ||||||||||||||||||||||| || || ||||| ||||| ||||||||||||||   |||||  |  ||   || ||||   |   ||| |    | | |  |    ||   |  | |    ||   |    | |     |    || | ||   |                                                            
GGCAAGCAGGCAAAGCTCCTGATGTCTTTTACTGCTTGAGGCTTCTTGAAGCCACTGGAATTTCCACTGTGCCAGGGTCAGGGTTTGGTCAGAAAGAAGGgtatgattttctacacgtgcattgcgtttctaccatcatcgtacattatgcttcagttaactaaatagcagttgatcaccggagttggatcaggtgctgctttcaagcaggaatgattttctacactgttgatcactactgacgtcggccttaatttgtgcacag

upper sequence: Vv00s0225g00130.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: EFJ30498 (Selaginella moellendorffii), 5'ss of exon 12
AAAAGGCTGGTAAAGTGGCTGATGTTTTCTACTGCCTCAAGCTCTTGGAAGCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaattttttcccttgtttcttccgttgtaatttcaacaactgtcttctcattcctttcacaatgtttctacttgcgtgaaacctttcatgttactgata
   |||| || ||||  || ||||||||||||||||||||||||||||| || || ||||||||||| ||||| || || ||||| || || |||||||||| |    ||       |  || | |   ||    | |    || ||  | |                                                
CTCAGGCAGGAAAAGCAGCAGATGTTTTCTACTGCCTCAAGCTCTTGGAGGCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactttggaaactcttttc-tctcaacacaagctttcgtttttgcgtag----------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32270153|gb|CD719312.1|CD719312
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|30135756|gb|CB921094.1|CB921094
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|29785334|gb|CB342233.2|CB342233
EST:     GCCACTGGAATTTCCCCTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCCCTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|71877299|gb|DT026354.1|DT026354
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|32247739|gb|CD713558.1|CD713558
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         NGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|352769572|gb|FQ468500.1|FQ468500
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|351023682|gb|FQ448233.1|FQ448233
EST:     CCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCCCTTAAGAACAAC
genomic: CC-ACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAAC
EST: gi|18458318|gb|BM436596.1|BM436596
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGAACATGCCTG
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGA-CATGCCTG
EST: gi|46919321|gb|CN548650.1|CN548650
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTTTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|32248182|gb|CD714001.1|CD714001
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCANGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|29784204|gb|CB344645.2|CB344645
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|77581124|gb|DV219488.1|DV219488
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|32247905|gb|CD713724.1|CD713724
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|28958445|gb|CB339217.1|CB339217
EST:     GCCACTGGAATTTCCCCTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|33409332|gb|CF214959.1|CF214959
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|30251649|gb|CB969382.1|CB969382
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|110367597|gb|EC931540.1|EC931540
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|110690265|gb|EE067211.1|EE067211
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|28960253|gb|CB340127.1|CB340127
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|30325827|gb|CD009089.1|CD009089
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|351037170|gb|FQ457003.1|FQ457003
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGAACAACCATCTTGCCAGCTGAGGAAGAGATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|33409522|gb|CF215149.1|CF215149
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|30322019|gb|CD005281.1|CD005281
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|28962352|gb|CB341385.1|CB341385
EST:     GCCCCTGGAATTTCCCCTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGAAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|30251685|gb|CB969418.1|CB969418
EST:     GCCACTGGAATTTCCCCTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|110377606|gb|EC942684.1|EC942684
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|110361483|gb|EC924957.1|EC924957
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|351026640|gb|FQ436293.1|FQ436293
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGAACAACCATCTTGCCAGCTGAGGAAGAGATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|110378242|gb|EC943362.1|EC943362
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|30299121|gb|CB975915.1|CB975915
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|352772700|gb|FQ472743.1|FQ472743
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|352781103|gb|FQ466416.1|FQ466416
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|351026761|gb|FQ436414.1|FQ436414
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAGGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|110372740|gb|EC936928.1|EC936928
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|32249335|gb|CD715154.1|CD715154
EST:     CAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: CAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|26263684|gb|CA814747.1|CA814747
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|110417553|gb|EC983619.1|EC983619
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|32250342|gb|CD716161.1|CD716161
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|22012406|gb|BQ797440.1|BQ797440
EST:     CCACTGGAATTTGCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: CCACTGGAATTT-CCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|26265676|gb|CA816739.1|CA816739
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|33409576|gb|CF215203.1|CF215203
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|27578604|gb|CB001299.1|CB001299
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|110362940|gb|EC926503.1|EC926503
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|110379655|gb|EC944867.1|EC944867
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|351025435|gb|FQ435127.1|FQ435127
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAAAACAACCATCTTGCCAGCTGAAGAAGAAATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|110377565|gb|EC942640.1|EC942640
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|71874055|gb|DT023110.1|DT023110
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|110424776|gb|EC991148.1|EC991148
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|110399539|gb|EC966047.1|EC966047
EST:     TTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: TTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|29784845|gb|CB341320.2|CB341320
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGAAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|32248822|gb|CD714641.1|CD714641
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|30299262|gb|CB976056.1|CB976056
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|351040056|gb|FQ425142.1|FQ425142
EST:     GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
genomic: GCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTGC
EST: gi|32245345|gb|CD711164.1|CD711164
EST:     CCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAAGAAGG                         GGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTG
genomic: CCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAA-GAAGGgtaatttttt ... ttgtgtctagGGTCTTCCACTTAAGGACAACCATCTTGCCAGCTGAGGAAGACATGCCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAAGGCTGGTAAAGTGGCTGATGTTTTCTACTGCCTCAAGCTCTTGGAAGCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaattttttcccttgtttcttccgttgtaatttcaacaactgtcttctcattcctttcacaatgtttctacttgcgtgaaacctttcatgttactgata

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgaaac