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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTTGCGAACATAACAGTTGGGCATGATACAGgttcacttctctctctttctttttgctcatgttgatttccaatttaatattactttttattggtatccttaatgtttcttgtccttttaaaacctgatgt...

Basic information

species Vitis vinifera
transcript Vv00s0220g00080.t01
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32269920|gb|CD719079.1|CD719079
EST:     GATTTTGCGAACATAACAGTTGGGCATGATACAG                         AGTTTCTGAATGTAGATGATGATGAAGTGGCTGATGATGATGACTATATGC
genomic: GATTTTGCGAACATAACAGTTGGGCATGATACAGgttcacttct ... ggtctttcagAGTTTCTGAATGTAGATGATGATGAAGTGGCTGATGATGATGACTATATGC
EST: gi|32272378|gb|CD721537.1|CD721537
EST:     GATTTTGCGAACATAACAGTTGGGCATGATACAG                         AGTTTCTGAATGTAGATGATGATGAAGTGGCTGATGATGATGACTATATGC
genomic: GATTTTGCGAACATAACAGTTGGGCATGATACAGgttcacttct ... ggtctttcagAGTTTCTGAATGTAGATGATGATGAAGTGGCTGATGATGATGACTATATGC
EST: gi|34549915|gb|CF518147.1|CF518147
EST:     GATTTTGCGAACATAACAGTTGGGCATGATACAG                         AGTTTCTGAATGTAGATGATGATGAAGTGGCCGATGATGATGACTATATGC
genomic: GATTTTGCGAACATAACAGTTGGGCATGATACAGgttcacttct ... ggtctttcagAGTTTCTGAATGTAGATGATGATGAAGTGGCTGATGATGATGACTATATGC
EST: gi|28963280|gb|CB342313.1|CB342313
EST:     GATTTTGCGAACATAACAGTTGGGCATGATACAG                         AGTTTCTGAATGTA
genomic: GATTTTGCGAACATAACAGTTGGGCATGATACAGgttcacttct ... ggtctttcagAGTTTCTGAATGTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATTTTGCGAACATAACAGTTGGGCATGATACAGgttcacttctctctctttctttttgctcatgttgatttccaatttaatattactttttattggtatccttaatgtttcttgtccttttaaaacctgatgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc