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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAATGGGAGAATCAGCAGTTGATTGTGGTAGTCTGTCTTCAATGCCTAATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCAGCCCCAAGCAGgtatgataaaaattgatctcattttcaaatttgtttaaatggttcttgttcttttatcttgtttgtcttagatgcatgtgacgtggttcctccaaccaag...

Basic information

species Vitis vinifera
transcript Vv19s0090g00830.t01
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352789999|gb|FQ479609.1|FQ479609
EST:     ATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCAGCCCCAAGCAG                         TACATCCTCAAAGTGGGTGAGGGAGAAATAGCTCAATGCATTAGTGGATTT
genomic: ATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCAGCCCCAAGCAGgtatgataaa ... tggcgatcagTACATCCTCAAAGTGGGTGAGGGAGAAATAGCTCAATGCATTAGTGGATTT
EST: gi|349814602|gb|FQ399242.1|FQ399242
EST:     ATGTTTCGTTAACCATTGGTGGAAATGTATTTGATCTCAGCCCCAAGCAG                         TACATCCTCAAAGTGAGTGAGGGAGAAATAGCTCAATGCATTAGTGGATTT
genomic: ATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCAGCCCCAAGCAGgtatgataaa ... tggcgatcagTACATCCTCAAAGTGGGTGAGGGAGAAATAGCTCAATGCATTAGTGGATTT
EST: gi|349818053|gb|FQ408828.1|FQ408828
EST:     ATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCAGCCCCAAGCAG                         TACATCCTCAAAGTGGGTGAGGGAGAAATAGCTCAATGCATTAGTGGATTT
genomic: ATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCAGCCCCAAGCAGgtatgataaa ... tggcgatcagTACATCCTCAAAGTGGGTGAGGGAGAAATAGCTCAATGCATTAGTGGATTT
EST: gi|349817267|gb|FQ405271.1|FQ405271
EST:     ATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCAGCCCCAAGCAG                         TACATCCTCAAAGTGGGTGAGGGAGAAATAGCTCAATGCATTAGTGGATTT
genomic: ATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCAGCCCCAAGCAGgtatgataaa ... tggcgatcagTACATCCTCAAAGTGGGTGAGGGAGAAATAGCTCAATGCATTAGTGGATTT
EST: gi|349811678|gb|FQ409675.1|FQ409675
EST:     ATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCACCCCCAAGCCG                         TACATCCTCAAAGTGGGTGAG
genomic: ATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCAGCCCCAAGCAGgtatgataaa ... tggcgatcagTACATCCTCAAAGTGGGTGAG
EST: gi|349811177|gb|FQ406165.1|FQ406165
EST:     ATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCAGCCCCAAGCAG                         TACATCCTCAAAGTGGGTGAGGGAGAAATAGCTCAATGCATTAGTGGATTT
genomic: ATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCAGCCCCAAGCAGgtatgataaa ... tggcgatcagTACATCCTCAAAGTGGGTGAGGGAGAAATAGCTCAATGCATTAGTGGATTT
EST: gi|352763582|gb|FQ473285.1|FQ473285
EST:     ATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCAGCCCCAAGCAG                         TACATCCTCAAAGTGGGTGAGGGAGAAATAGCTCAATGCATTAGTGGATTT
genomic: ATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCAGCCCCAAGCAGgtatgataaa ... tggcgatcagTACATCCTCAAAGTGGGTGAGGGAGAAATAGCTCAATGCATTAGTGGATTT
EST: gi|110362682|gb|EC926231.1|EC926231
EST:     ATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCAGCCCCAAGCAG                         TACATCCTCAAAGTGGGTGAGGGAGAAATAGCTCAATGCATTAGTGGATTT
genomic: ATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCAGCCCCAAGCAGgtatgataaa ... tggcgatcagTACATCCTCAAAGTGGGTGAGGGAGAAATAGCTCAATGCATTAGTGGATTT
EST: gi|349807900|gb|FQ402291.1|FQ402291
EST:     ATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCAGCCCCAAGCAG                         TACATCCTCAAAGTGGGTGAGGGAGAAATAGCTCAATGCATTAGTGGATTT
genomic: ATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCAGCCCCAAGCAGgtatgataaa ... tggcgatcagTACATCCTCAAAGTGGGTGAGGGAGAAATAGCTCAATGCATTAGTGGATTT
EST: gi|352798701|gb|FQ480726.1|FQ480726
EST:     ATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCAGCCCCAAGCAG                         TACATCCTCAAAGTGGGTGAGGGAGAAATAGCTCAATGCATTAGTGGATTT
genomic: ATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCAGCCCCAAGCAGgtatgataaa ... tggcgatcagTACATCCTCAAAGTGGGTGAGGGAGAAATAGCTCAATGCATTAGTGGATTT
EST: gi|110418441|gb|EC984598.1|EC984598
EST:     ATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCAGCCCCAAGCAG                         TACATCCTCAAAGTGGGTGAGGGAGAAATAGCTCAATGCATTAGTGGATTT
genomic: ATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCAGCCCCAAGCAGgtatgataaa ... tggcgatcagTACATCCTCAAAGTGGGTGAGGGAGAAATAGCTCAATGCATTAGTGGATTT
EST: gi|351036374|gb|FQ458749.1|FQ458749
EST:     ATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCAGCCCCAAGCAG                         TACATCCTCAAAGTGGGTGAGGGAGAAATAGCTCAATGCATTAGTGGATTT
genomic: ATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCAGCCCCAAGCAGgtatgataaa ... tggcgatcagTACATCCTCAAAGTGGGTGAGGGAGAAATAGCTCAATGCATTAGTGGATTT
EST: gi|349816754|gb|FQ399622.1|FQ399622
EST:     ATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCAGCCCCAAGCAG                         TACATCCTCAAAGTGGGTGAGGGAGAAATAGCTCAATGCATTAGTGGATTT
genomic: ATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCAGCCCCAAGCAGgtatgataaa ... tggcgatcagTACATCCTCAAAGTGGGTGAGGGAGAAATAGCTCAATGCATTAGTGGATTT
EST: gi|351051626|gb|FQ450178.1|FQ450178
EST:     ATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCAGCCCCAAGCAG                         TACATCCTCAAAGTGGGTGAGGGAGAAATAGCTCAATGCATTAGTGGATTT
genomic: ATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCAGCCCCAAGCAGgtatgataaa ... tggcgatcagTACATCCTCAAAGTGGGTGAGGGAGAAATAGCTCAATGCATTAGTGGATTT
EST: gi|349817835|gb|FQ407824.1|FQ407824
EST:     ATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCAGCCCCAAGCAG                         TACATCCTCAAAGTGGGTGAGGGAGAAATAGCTCAATGCATTAGTGGATTT
genomic: ATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCAGCCCCAAGCAGgtatgataaa ... tggcgatcagTACATCCTCAAAGTGGGTGAGGGAGAAATAGCTCAATGCATTAGTGGATTT
EST: gi|349814554|gb|FQ399194.1|FQ399194
EST:     ATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCAGCCCCAAGCAG                         TACATCCTCAAAGTGGGTGAGGGAGAAATAGCTCAATGCATTAGTGGATTT
genomic: ATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCAGCCCCAAGCAGgtatgataaa ... tggcgatcagTACATCCTCAAAGTGGGTGAGGGAGAAATAGCTCAATGCATTAGTGGATTT
EST: gi|351037515|gb|FQ460714.1|FQ460714
EST:     ATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCAGCCCCAAGCAG                         TACATCCTCAAAGTGGGTGAGGGAGAAATAGCTCAATGCATTAGTGGATTT
genomic: ATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCAGCCCCAAGCAGgtatgataaa ... tggcgatcagTACATCCTCAAAGTGGGTGAGGGAGAAATAGCTCAATGCATTAGTGGATTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCAATGGGAGAATCAGCAGTTGATTGTGGTAGTCTGTCTTCAATGCCTAATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCAGCCCCAAGCAGgtatgataaaaattgatctcattttcaaatttgtttaaatggttcttgttcttttatcttgtttgtcttagatgcatgtgacgtggttcctccaaccaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcctcc