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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGCATTTGAGATAACATATTTCTTTTGGATATGGgtaatgccctgctttcctttgttctttatcattgttttgattttcagtgctagtgttttgaatactttctcctgctgcag

Basic information

species Vitis vinifera
transcript Vv18s0122g00910.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0122g00910.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT1G42560.1 (Arabidopsis thaliana), 5'ss of exon 12
AATGCATTTGAGATAACATATTTCTTTTGGATATGGgta-----------atgccctgctttcctttgttctttatcattgttttgattttcagtgctagtgttttgaat--------actttctcctgctgcag
||||| ||||||||||| ||||| |||||||||||||||           ||  | |  | |  ||| | ||||||  | ||  | |||     |   | | |||  |||        | ||  || || |||||
AATGCTTTTGAGATAACTTATTTTTTTTGGATATGGgtaaacttttcagaatctcttcttctagtttttactttatgttggtactaattgcttctagaaatttttataataatgttataattattcttgttgcag