1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AATTGGGCTTACACCTGAAGAAGTTATTTCAAAAATTATGGCCAATCCTGATGTTGCCCTGGCATTTCAAAATCCAAGAATTCAAGCAGCCATCATGGATgtatgccctaattgcagcactttctctcctttttttccctcttttaaattcttcatatctttttggacagtttcctttgaagtccttcaattattttttcactatatagtattctataacatttggttatttctgcag
species | Vitis vinifera |
transcript | Vv18s0041g01360.t01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: ATGTTGCCCTGGCATTTCAAAATCCAAGAATTCAAGCAGCCATCATGGAT TGTTCTCAGAACCCTCTGAGTATTGCAAAGTATCAAAATGACAAGGAGEST: gi|352769084|gb|FQ471032.1|FQ471032
genomic: ATGTTGCCCTGGCATTTCAAAATCCAAGAATTCAAGCAGCCATCATGGATgtatgcccta ... atttctgcagTGTTCTCAGAACCCTCTGAGTATTGCAAAGTATCAAAATGACAAGGAG
EST: ATGTTGCCCTGGCATTTCAAAATCCAAGAATTCAAGCAGCCATCATGGAT TGTTCTCAGAACCCTCTGAGTATTGCAAAGTATCAAAATGACAAGGAGEST: gi|110369051|gb|EC933194.1|EC933194
genomic: ATGTTGCCCTGGCATTTCAAAATCCAAGAATTCAAGCAGCCATCATGGATgtatgcccta ... atttctgcagTGTTCTCAGAACCCTCTGAGTATTGCAAAGTATCAAAATGACAAGGAG
EST: ATGTTGCCCTGGCATTTCAAAATCCAAGAATTCAAGCAGCCATCATGGAT TGTTCTCAGAACCCTCTGAGTATTGCAAAGTATCAAAATGACAAGGAGEST: gi|37183876|gb|CF603230.1|CF603230
genomic: ATGTTGCCCTGGCATTTCAAAATCCAAGAATTCAAGCAGCCATCATGGATgtatgcccta ... atttctgcagTGTTCTCAGAACCCTCTGAGTATTGCAAAGTATCAAAATGACAAGGAG
EST: ATGTTGCCCTGGCATTTCAAAATCCAAGAATTCAAGCAGCCATCATGGAT TGTTCTCAGAACCCTCTGAGTATTGCAAAGTATCAAAATGACAAGGAGEST: gi|46918636|gb|CN547965.1|CN547965
genomic: ATGTTGCCCTGGCATTTCAAAATCCAAGAATTCAAGCAGCCATCATGGATgtatgcccta ... atttctgcagTGTTCTCAGAACCCTCTGAGTATTGCAAAGTATCAAAATGACAAGGAG
EST: ATTTCAAAATCCAAGAATTCAAGCAGCCATCATGGAT TGTTCTCAGAACCCTCTGAGTATTGCAAAGTATCAAAATGACAAGGAGEST: gi|32268986|gb|CD718145.1|CD718145
genomic: ATTTCAAAATCCAAGAATTCAAGCAGCCATCATGGATgtatgcccta ... atttctgcagTGTTCTCAGAACCCTCTGAGTATTGCAAAGTATCAAAATGACAAGGAG
EST: ATGTTGCCCTGGCATTTCAAAATCCAAGAATTCAAGCAGCCATCATGGAT TGTTCTCAGAACCCTCTGAGTATTGCAAAGTATCAAAATGACAAGGAG
genomic: ATGTTGCCCTGGCATTTCAAAATCCAAGAATTCAAGCAGCCATCATGGATgtatgcccta ... atttctgcagTGTTCTCAGAACCCTCTGAGTATTGCAAAGTATCAAAATGACAAGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTGGGCTTACACCTGAAGAAGTTATTTCAAAAATTATGGCCAATCCTGATGTTGCCCTGGCATTTCAAAATCCAAGAATTCAAGCAGCCATCATGGATgtatgccctaattgcagcactttctctcctttttttccctcttttaaattcttcatatctttttggacagtttcctttgaagtccttcaattattttttcactatatagtattctataacatttggttatttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA