Sequence
atgc intronic sequence ATGC exonic sequenceAGGAGTGGACAATTTATCCTTGGATCCACAGCAATTGCAATTCACTATCAGAAAACGACCAACTTCGTCCTGTTTCGATTCCTGATATGCATCCAGCCAGgtattcgtgcttatgtttatgtgatttttctttaattttctgttctcattttactcttcaaaatgatttatgagtcacaagcaaacaaatcagattttct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0041g00100.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os05g43560.1 (Oryza sativa), 5'ss of exon 12
AGGAGTGGACAATTTATCCTTGGATCCACAGCAATTGCAATTCACTATCAGAAAACGACCAACTTCGTCCTGTTTCGATTCCTGATATGCATCCAGCCAGgtattcgtgc-ttatgtttatgtgatttttctttaattttctgttctcattttactcttcaaaatgatttatgagt-cacaagcaaacaaatcagattttct
| |||||||| || ||||||||||| |||||||| |||||||| || ||||| || || |||||||| |||||||| |||||||||| || || | ||||| | || ||||| | | | | | | || | | || | | || ||| | || | || ||| | | | || | || |
ATGAGTGGACTATATATCCTTGGATACACAGCAACTGCAATTCTCTTTCAGACAATGATCAACTTCGCCCTGTTTCATTTCCTGATATTCACCCCTCAAGgtaataaagcaccttgttttttctcataagcaccagtatgct-tgcaaatgctg-tgttaaaattcatcgctctgtacacttgatagcgtatgaccttagtt
upper sequence: Vv18s0041g00100.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA20G16030.1 (Glycine max), 5'ss of exon 12
AGGAGTGGACAATTTATCCTTGGATCCACAGCAATTGCAATTCACTATCAGAAAACGACCAACTTCGTCCTGTTTCGATTCCTGATATGCATCCAGCCAGgtattcgtgcttatgtttatgtgatttttctttaattttctgttctcattttactcttcaaaatgatttatgagtcacaagcaaacaaatcagattttct--
||||||||||||||||||||||| |||||||||||||||||| ||||||| | || ||||||||||||||||| || || ||||||||||||||||||||| | || ||| | || |||| | || | | ||||| | | | | | | | | | || |
GCGAGTGGACAATTTATCCTTGGATTCACAGCAATTGCAATTCATTATCAGACAGTGATCAACTTCGTCCTGTTTCAATACCAGATATGCATCCAGCCAGgtatatacattgattttttta--ataaaggaaaaattattagtataaaaaaagggttgcaaaaaggaaccgtaataattgttagatataaaatgattcatgt
upper sequence: Vv18s0041g00100.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA13G10730.1 (Glycine max), 5'ss of exon 14
AGGAGTGGACAATTTATCCTTGGATCCACAGCAATTGCAATTCACTATCAGAAAACGACCAACTTCGTCCTGTTTCGATTCCTGATATGCATCCAGCCAGgtattcgtgcttatgtttatg-tgatttttctttaattttctgttctcattttactcttcaaaatgat----ttatgagtcacaagcaaacaaatcagattttct
||||||||||||||||||||||| |||||||||||||||||| ||||||| | || ||||||||||||||||| || || ||||| ||||||||||||||| | || ||| | | | || ||| | | | | | ||||| | | || | | | | | || | ||
GTGAGTGGACAATTTATCCTTGGATTCACAGCAATTGCAATTCATTATCAGACAGTGATCAACTTCGTCCTGTTTCAATACCAGATATTCATCCAGCCAGgtatatacattgatttttttaataaaagaaaatttattagttagtataaaaaagggttgcaaaagggaaccataataattgttagagatgtatataaaat-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34549600|gb|CF517832.1|CF517832EST: GACAACGACCAACTTCGTCCTGTTTCGATTCCTGATATGCATCCAGCCAG TGCAGGGATCACTGAAGGCTTTTCAATGTGTGGTGGTGACTTTGTTGAAGT
genomic: GAAAACGACCAACTTCGTCCTGTTTCGATTCCTGATATGCATCCAGCCAGgtattcgtgc ... ttgcgtgcagTGCAGGGATCACTGAAGGCTTTTCAATGTGTGGTGGTGACTTTGTTGAAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGAGTGGACAATTTATCCTTGGATCCACAGCAATTGCAATTCACTATCAGAAAACGACCAACTTCGTCCTGTTTCGATTCCTGATATGCATCCAGCCAGgtattcgtgcttatgtttatgtgatttttctttaattttctgttctcattttactcttcaaaatgatttatgagtcacaagcaaacaaatcagattttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa