Sequence
atgc intronic sequence ATGC exonic sequenceTTACGTTCATCGTGTTGGTCGTACAGCAAGGGCTGGTAGAGAAGGATATGCTGTTACATTTGTAACTGATAATGATAGATCTCTCTTGAAATCTATAgtaagcatcatattttcttagtttctccacaaatctatttcttaggctttcattttttctttttataaattttggcaacgctacatgatagaggtgtcag...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g14540.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os12g29660.1 (Oryza sativa), 5'ss of exon 12
TTACGTTCATCGTGTTGGTCGTACAGCAAGGGCTGGTAGAGAAGGATATGCTGTTACATTTGTAACTGATAATGATAGATCTCTCTTGAAATCTATAgtaagcatcatattttct----tagtttctccac-aaatctatttcttaggctttcattttttctttttataaattttggcaacgctacatgatagaggtgtcag
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TTATCTACATCGTGTTGGACGCACTGCTCGTGCAGGCAGAGAAGGATATGCTGTGACATTTGTTACTGACGATGATAGGTCCCTCTTGAAAGCTATTgtaagtatattgttatgagcaatggtctgtgaaccaaaataaattcttaaaaaaactccacagaacactaaaagcctaatcagcg-tgtttaatgtgaata----
upper sequence: Vv18s0001g14540.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM5G804064_T01 (Zea mays), 5'ss of exon 12
TTACGTTCATCGTGTTGGTCGTACAGCAAGGGCTGGTAGAGAAGGATATGCTGTTACATTTGTAACTGATAATGATAGATCTCTCTTGAAATCTATAgtaagcatcatattttcttagtttctccacaaatctatttcttaggctttcattttttctttttataaa--ttttggcaacgctacatgatagaggtgtcag
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TTATCTTCATCGTGTTGGCCGCACAGCACGGGCAGGAAGAGAAGGCTATGCCGTAACATTTGTAACCGATGATGATAGATCCCTCTTGAAAGCAATTgtaagtattttaaatgctgaaaattgttgtaattctttggaatagatgtgctagcagatgtgttgtaattcttttattcggattgcttaagcaaccctct--
upper sequence: Vv18s0001g14540.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G420865_T01 (Zea mays), 5'ss of exon 12
TTACGTTCATCGTGTTGGTCGTACAGCAAGGGCTGGTAGAGAAGGATATGCTGTTACATTTGTAACTGATAATGATAGATCTCTCTTGAAATCTATAgtaagcatcatattttcttagtttctccacaaatctatttcttaggctttcat--tttttctttttataaat-tttggcaacgctacatgatagaggtgtcag
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TTATCTTCATCGTGTTGGCCGCACTGCGCGGGCAGGAAGAGAAGGCTATGCTGTGACATTTGTAACCGATGATGATAGATGCCTCTTGAAAGCAATTgtaagtat--ttctgtgatatcctgaagtctgaaaaatgttgtaatccttcagaatagatgtgctcacagatgtgttgttattcttt-taatcggattgctta
upper sequence: Vv18s0001g14540.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA18G11950.1 (Glycine max), 5'ss of exon 12
TTACGTTCATCGTGTTGGTCGTACAGCAAGGGCTGGTAGAGAAGGATATGCTGTTACATTTGTAACTGATAATGATAGATCTCTCTTGAAATCTATAgtaagcatcatat------tttcttagtttctccacaaatctatttcttaggctttcattttttctttttataaattttggcaacgctacatgatagaggtgtcag
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CTATGTTCATCGAGTTGGTCGTACTGCAAGAGCTGGAAGAGAAGGATATGCAGTCACTTTTGTGACTGACAATGACCGATCACTTTTAAAAGCCATTgtgagtatcatttgaagaatcactgcatttgttttcagcgttgtttcatatttccttgcagttt-tccttataagataaaaaagttgtgcatgct-gatctg----
upper sequence: Vv18s0001g14540.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA02G25240.1 (Glycine max), 5'ss of exon 12
TTACGTTCATCGTGTTGGTCGTACAGCAAGGGCTGGTAGAGAAGGATATGCTGTTACATTTGTAACTGATAATGATAGATCTCTCTTGAAATCTATAgtaagcatcatattttcttagtttctccacaaatctatttcttaggctttcattttttctttttata-aattttggcaacgctacatgatagaggtgtcag-----
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CTATGTTCATCGAGTGGGTCGTACTGCAAGAGCCGGAAGAGAAGGATATGCTGTCACTTTTGTGACTGACAATGACCGATCACTTTTAAAAGCCATTgtgagtatcat--ttgaagagttgctgca----tttgtttttcagctttatttcatatttccttgcacgattttccttttaagataaaaaagttgtgcatgctgat
upper sequence: Vv18s0001g14540.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA09G15220.1 (Glycine max), 5'ss of exon 11
TTACGTTCATCGTGTTGGTCGTACAGCAAGGGCTGGTAGAGAAGGATATGCTGTTACATTTGTAACTGATAATGATAGATCTCTCTTGAAATCTATAgtaagcatcatattttcttagtttctccacaaatctatttcttaggctttcattttttctttttataa-attttggcaacgctacatgatagaggtgtcag-----
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CTATGTTCATCGAGTGGGTCGTACTGCAAGAGCCGGAAGAGAAGGATATGCTGTCACTTTTGTGACTGACAATGACCGATCACTTTTAAAAGCCATTgtgagtatcat--ttgaagagttgctgca----tttgtttttcagctttatttcatatttccttgcactgttttcgttataagataaaaaagttgtgcatgctgatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|349812869|gb|FQ410511.1|FQ410511EST: ATGCTGTTACATTTGTAACTGATAATGATAGATCTCTCTTGAAATCTATA GTGAAGAGAGCTGGTTCAAAGCTGAGGAGCCGAATTGTTGCAGAGCAATCT
genomic: ATGCTGTTACATTTGTAACTGATAATGATAGATCTCTCTTGAAATCTATAgtaagcatca ... gatgtaacagGTGAAGAGAGCTGGTTCAAAGCTGAGGAGCCGAATTGTTGCAGAGCAATCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTACGTTCATCGTGTTGGTCGTACAGCAAGGGCTGGTAGAGAAGGATATGCTGTTACATTTGTAACTGATAATGATAGATCTCTCTTGAAATCTATAgtaagcatcatattttcttagtttctccacaaatctatttcttaggctttcattttttctttttataaattttggcaacgctacatgatagaggtgtcag
- - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - GCTGTT