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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCTGAGTTCCCTTCAGCGAAACCTCCCCTCGGTGTTTTCTTTGCAGCAATTGCCCCTCGATTGCAGCCTCGTTACTATTCAATCTCATCCTCTCCTAGgtgaatttcttgttcccatatgtagtgtttcaaataaattctatctaatcttagaaaataaggaatttgattgactgcttcacttcatgcag

Basic information

species Vitis vinifera
transcript Vv18s0001g07630.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA04G10200.1 (Glycine max), 5'ss of exon 12
TGGCTGAGTTCCCTTCAGCGAAACCTCCCCTCGGTGTTTTCTTTGCAGCAATTGCCCCTCGATTGCAGCCTCGTTACTATTCAATCTCATCCTCTCCTAGgtgaatttcttgttcccatatgtagtgtttcaaataaattctatctaatcttagaaaataaggaatttgattg-actgcttcact-tcatgcag
||||||||||||| ||||| ||||||||||| |||||||| ||||| ||| | |||||||| || ||||||||||| ||||| || |||||||||||||||||  | |||| | |  || |  ||| |  ||||| || | | | |||  | |   |  ||| |||   || | | | ||| | | ||| |   
TGGCTGAGTTCCCATCAGCCAAACCTCCCCTTGGTGTTTTTTTTGCTGCAGTAGCCCCTCGTTTACAGCCTCGTTATTATTCTATTTCATCCTCTCCTAGgtggttatcttat-cttatttaaagtatc-caaatgaagtttttataagataatggacgaagaaataatatcgcattacttgattgtcaag---

upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA06G10180.1 (Glycine max), 5'ss of exon 12
TGGCTGAGTTCCCTTCAGCGAAACCTCCCCTCGGTGTTTTCTTTGCAGCAATTGCCCCTCGATTGCAGCCTCGTTACTATTCAATCTCATCCTCTCCTAGgtgaatttcttgttcccatatgtagtgtttcaaataaa--ttctatctaatcttagaaaataaggaatttgattgactgcttcacttcatgcag
|||||||||| || ||||| |||||||| || |||||||| ||||| ||| | |||||||| || ||||||||||| ||||| || |||||||||||||||||  | |||| | |  || |  ||| |  ||||| ||  || |||   ||  | |   | |  ||   |     | | ||| | |   | |||
TGGCTGAGTTTCCATCAGCCAAACCTCCACTAGGTGTTTTTTTTGCTGCAGTGGCCCCTCGTTTACAGCCTCGTTATTATTCTATTTCATCCTCTCCTAGgtggttatcttat-cttatttaaagtatc-caaatgaagtttttataagataattggtgaaagagataatatcatattacttgatt--gtccag

upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA02G37850.1 (Glycine max), 5'ss of exon 12
TGGCTGAGTTCCCTTCAGCGAAACCTCCCCTCGGTGTTTTCTTTGCAGCAATTGCCCCTCGATTGCAGCCTCGTTACTATTCAATCTCATCCTCTCCTAGgtgaatttcttgttcccatatgtagtgtttcaaataaattctatctaatcttagaaaataagg-aat-ttgattgactgcttcacttcatgcag
||||||||||||| ||||| ||||| || || ||||| || ||||| ||| | |||||||  || || ||| |||| ||||| || |||||||| ||||||||| | |||| | |  || |  | | | | ||  || || ||    |     |   ||||   ||| ||| ||   |  |  | |  |     
TGGCTGAGTTCCCCTCAGCAAAACCACCGCTTGGTGTGTTTTTTGCTGCAGTAGCCCCTCACTTACAACCTTGTTATTATTCTATTTCATCCTCGCCTAGgtgattatcttatact-atctaaaatatatgaacaaagttttaagagagaagtggccataaaataatgttgtttagtttttatattctag----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27584661|gb|CB007356.1|CB007356
EST:     CTCGATTGCAGCCTCGTTACTATTCAATCTCATCCTCTCCTAG                         GTATGCGTCCCATAGAGTTCATGTAACCTGTGCTTTGGTCTATGGTCCAAG
genomic: CTCGATTGCAGCCTCGTTACTATTCAATCTCATCCTCTCCTAGgtgaatttct ... cttcatgcagGTATGCGTCCCATAGAGTTCATGTAACCTGTGCTTTGGTCTATGGTCCAAG