Sequence
atgc intronic sequence ATGC exonic sequenceGGCCCTTGAGGATCTTCAGAGGATTCATGCTGCTGAGGATCTGGCTGCTGATGAAGGTGGTGGAGTGGAAATGCATGTTCTTGAAGATGCTGGTCATTGGgtatgtggctctcacctgcttcaattcttacaattatcttctgaaccacctagtatacactttacaggtgtgcttatgcttgcatttcttttaacaaaaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g06010.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os01g66240.1 (Oryza sativa), 5'ss of exon 12
GGCCCTTGAGGATCTTCAGAGGATTCATGCTGCTGAGGATCTGGCTGCTGATGAAGGTGGTGGAGTGGAAATGCATGTTCTTGAAGATGCTGGTCATTGGgtatgtggctctcacctgcttcaattcttacaattatcttctgaaccacctagtatacactttacaggtgtgcttatgcttgcatttcttttaacaaaaa---
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GGCTCTTGATGATCTCCAGAGAATTCATACTGCTGAGGAACTGGCTGCAGATGAGGGTGGAGGAGTTGAAATGCACGTGCTTGAAGATGCTGGACATTGGgtatgcttactatatccttgtaattactcctag--atcttctgg-cagcattctccataagatagtactgtgatgaaaaagtagtattctttactacagctta
upper sequence: Vv18s0001g06010.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA11G01670.1 (Glycine max), 5'ss of exon 12
GGCCCTTGAGGATCTTCAGAGGATTCATGCTGCTGAGGATCTGGCTGCTGATGAAGGTGGTGGAGTGGAAATGCATGTTCTTGAAGATGCTGGTCATTGGgtatgtggctctcacctgcttcaattcttacaattatcttctgaac-cacctagtatacactttacaggtgtgcttatgcttgcatttcttttaacaaaaa---
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GGCTCTTGAAGATCTTCAGCGGATCCATGCAGCTGAAGAGCTTGCTGTTGAGGAAGGAGGTGGAGTTGAAATGCATGTCCTTGAAGATGCTGGCCACTGGgtatgta-ctataatgtcatacagttattatt-ttagagcatgatctcctccaatacgtgtgtttcagcttagg--acgtctatgctcatgatatctaaaatac
upper sequence: Vv18s0001g06010.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA01G44190.1 (Glycine max), 5'ss of exon 12
GGCCCTTGAGGATCTTCAGAGGATTCATGCTGCTGAGGATCTGGCTGCTGATGAAGGTGGTGGAGTGGAAATGCATGTTCTTGAAGATGCTGGTCATTGGgtatgtggc-tctcacctgcttcaattcttacaattatcttctgaaccacctagtatacactttacagg---tgtgcttatg---cttgcatttcttttaacaaaaa
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GGCTCTTGAAGACCTTCAGCGGATCCATGCAGCTGAAGAGCTTGCTGTTGAGGAAGGAGGGGGAGTTGAAATGCATGTCCTTGAAGATGCTGGCCACTGGgtatgtactatagtgccatagttattattttagagcatgatctcctcc-catacgtttcaccttaggagatctatgctcatgatatctaaaatacttttaa------
upper sequence: Vv18s0001g06010.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: PP1S90_13V6.1 (Physcomitrella patens), 5'ss of exon 12
GGCCCTTGAGGATCTTCAGAGGATTCATGCTGCTGAGGATCTGGCTGCTGATGAAGGTGGTGGAGTGGAAATGCATGTTCTTGAAGATGCTGGTCATTGGgtatgtggctctcacctgcttcaattcttacaattatctt---ctgaaccacctagtatacactttacaggtgtgctt---atgcttgcatttcttttaacaaaaa
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GGCCCACGAAGATGTGCAAAGGATTCATATGGCTGAGCAGATTGCATCCACAGAAGGTGCAGGAGTGCAAATGCATGTGCTTGAGGATGCTGGTCACTGGgtatgtttcctcattgtgcttgttttgttttggttcgcttatcttttcttaaagagcacctacgtttaaagtttaattcagaccttggtgatagttttga------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30295766|gb|CB972560.1|CB972560EST: ATGAAGGTGGTGGAGTGGAAATGCATGTTCTTGAAGATGCTGGTCATTGG GTGCACGCTGATAACCCAGATGGCCTCTTCAGGATTCTCTCCTCTTCCTTC
genomic: ATGAAGGTGGTGGAGTGGAAATGCATGTTCTTGAAGATGCTGGTCATTGGgtatgtggct ... tccttggcagGTGCACGCTGATAACCCAGATGGCCTCTTCAGGATTCTCTCCTCTTCCTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCCCTTGAGGATCTTCAGAGGATTCATGCTGCTGAGGATCTGGCTGCTGATGAAGGTGGTGGAGTGGAAATGCATGTTCTTGAAGATGCTGGTCATTGGgtatgtggctctcacctgcttcaattcttacaattatcttctgaaccacctagtatacactttacaggtgtgcttatgcttgcatttcttttaacaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa