1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGAAGATTGGGCTTTGAAGCAAGGAATAGCTTTCATTGATTTTTCAGACTTATGCCAGAAAGAAGAAACTGTGAAGGAAGTACATGCATCACTTGTGAAGgtaggcctattagataaacaattccagtgtcattcagattttggcattatcttaaggactttttactcccagcactccctttgctccatacatttatgca...
species | Vitis vinifera |
transcript | Vv18s0001g02810.t01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TATGCCAGAAAGAAGAAACTGTGAAGGAAGTACATGCATCACTTGTGAAG GCAGCAAAGCAGGCACGTCTGGAGAAGTTTGAGATCCCTGCCAAGATCAAAEST: gi|110418478|gb|EC984635.1|EC984635
genomic: TATGCCAGAAAGAAGAAACTGTGAAGGAAGTACATGCATCACTTGTGAAGgtaggcctat ... aatcatacagGCAGCAAAGCAGGCACGTCTGGAGAAGTTTGAGATCCCTGCCAAGATCAAA
EST: TATGCCAGAAAGAAGAAACTGTGAAGGAAGTACATGCATCACTTGTGAAG GCAGCAAAGCAGGCACGTCTGGAGAAGTTTGAGATCCCTGCCAAGATCAAAEST: gi|110389647|gb|EC954503.1|EC954503
genomic: TATGCCAGAAAGAAGAAACTGTGAAGGAAGTACATGCATCACTTGTGAAGgtaggcctat ... aatcatacagGCAGCAAAGCAGGCACGTCTGGAGAAGTTTGAGATCCCTGCCAAGATCAAA
EST: TATGCCAGAAAGAAGAAACTGTGAAGGAAGTACATGCATCACTTGTGAAG GCAGCAAAGCAGGCACGTCTGGAGAAGTTTGAGATCCCTGCCAAGATCAAAEST: gi|110407339|gb|EC972939.1|EC972939
genomic: TATGCCAGAAAGAAGAAACTGTGAAGGAAGTACATGCATCACTTGTGAAGgtaggcctat ... aatcatacagGCAGCAAAGCAGGCACGTCTGGAGAAGTTTGAGATCCCTGCCAAGATCAAA
EST: TATGCCAGAAAGAAGAAACTGTGAAGGAAGTACATGCATCACTTGTGAAG GCAGCAAAGCAGGCACGTCTGGAGAAGTTTGAGATCCCTGCCAAGATCAAAEST: gi|110364169|gb|EC923466.1|EC923466
genomic: TATGCCAGAAAGAAGAAACTGTGAAGGAAGTACATGCATCACTTGTGAAGgtaggcctat ... aatcatacagGCAGCAAAGCAGGCACGTCTGGAGAAGTTTGAGATCCCTGCCAAGATCAAA
EST: TATGCCAGAAAGAAGAAACTGTGAAGGAAGTACATGCATCACTTGTGAAG GCAGCAAAGCAGGCACGTCTGGAGAAGTTTGAGATCCCTGCCAAGATCAAAEST: gi|27587007|gb|CB009702.1|CB009702
genomic: TATGCCAGAAAGAAGAAACTGTGAAGGAAGTACATGCATCACTTGTGAAGgtaggcctat ... aatcatacagGCAGCAAAGCAGGCACGTCTGGAGAAGTTTGAGATCCCTGCCAAGATCAAA
EST: TATGCCAGAAAGAAGAAACTGTGAAGGAAGTACATGCATCACTTGTGAAG GCAGCAAAGCAGGCACGTCTGGAGAAGTTTGAGATCCCTGCCAAGATCAAAEST: gi|30330600|gb|CD013862.1|CD013862
genomic: TATGCCAGAAAGAAGAAACTGTGAAGGAAGTACATGCATCACTTGTGAAGgtaggcctat ... aatcatacagGCAGCAAAGCAGGCACGTCTGGAGAAGTTTGAGATCCCTGCCAAGATCAAA
EST: TATGCCAGAAAGAAGAAACTGTGAAGGAAGTACATGCATCACTTGTGAAG GCAGCAAAGCAGGCACGTCTGGAGAAGTTTGAGATCCCTGCCAAGATCAAA
genomic: TATGCCAGAAAGAAGAAACTGTGAAGGAAGTACATGCATCACTTGTGAAGgtaggcctat ... aatcatacagGCAGCAAAGCAGGCACGTCTGGAGAAGTTTGAGATCCCTGCCAAGATCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAGATTGGGCTTTGAAGCAAGGAATAGCTTTCATTGATTTTTCAGACTTATGCCAGAAAGAAGAAACTGTGAAGGAAGTACATGCATCACTTGTGAAGgtaggcctattagataaacaattccagtgtcattcagattttggcattatcttaaggactttttactcccagcactccctttgctccatacatttatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccctt