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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGTGATGAATGCTTTGAAGGCCAAAGAGTTCTATCGGCGGAATGTTCAATACATTGTTAGGAATGGGAAGGCTCTTATTATCAATGAGgtattaccatcatttgtatatcttttggtatcataatattttccatttctctatcattatctcctgtcacttttatggaatatttcatcatttctttctt...

Basic information

species Vitis vinifera
transcript Vv18s0001g01860.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g01860.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os11g08980.1 (Oryza sativa), 5'ss of exon 10
GTTTGTGATGAATGCTTTGAAGGCCAAAGAGTTCTATCGGCGGAATGTTCAATACATTGTTAGGAATGGGAAGGCTCTTATTATCAATGAGgtattaccatcatttgtatatcttttggtatcataatattttccatttctctatcattatctcctgtcacttttatggaatatttcatcatttctttctt
 |||||||||||||| ||||||||||||||||| || ||  || |||| ||||| ||||| ||| |||| || ||||| || || ||||||||| || |    |||   |||  ||    |  ||  | ||       |   || ||| |   | |   ||    |   |    |   |           |
ATTTGTGATGAATGCATTGAAGGCCAAAGAGTTTTACCGCAGGGATGTCCAATATATTGTGAGGGATGGAAAAGCTCTCATAATTAATGAGgtaatatctctgtttcggtattgttgacaaggattctgttagtttcatacttaccataaatccataatacagagacaaagctgtctgttgcgcaaaatat

upper sequence: Vv18s0001g01860.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G090086_T01 (Zea mays), 5'ss of exon 11
GTTTGTGATGAATGCTTTGAAGGCCAAAGAGTTCTATCGGCGGAATGTTCAATACATTGTTAGGAATGGGAAGGCTCTTATTATCAATGAGgtattaccatcatttgtatatcttttggtatcataatattttccatttctctatcattatctcctgtcacttttatggaatatttcatcatttctttctt
|||||||||||||||||||||||| |||| |||||| ||  || |||| || || ||||| ||| ||||||| ||| |||| || ||||||||| | ||     ||   ||| | |    |  ||        |||||  | | | | || ||  | | | || |||    |  |                
GTTTGTGATGAATGCTTTGAAGGCAAAAGTGTTCTACCGAAGGGATGTCCAGTATATTGTCAGGGATGGGAAAGCTATTATAATTAATGAGgtactccctgaggttcagtatttctgaaaagaatg-------ccattagtttcttagtagctgttcttatttgtatatgttcctag--------------

upper sequence: Vv18s0001g01860.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA06G12320.1 (Glycine max), 5'ss of exon 10
GTTTGTGATGAATGCTTTGAAGGCCAAAGAGTTCTATCGGCGGAATGTTCAATACATTGTTAGGAATGGGAAGGCTCTTATTATCAATGAGgtattaccatcatttgtatatcttttggtatcataatattttccatttctctatcattatctcctgtcacttttat--ggaatatttcatcatttctttctt--
 ||||||||||||||| | || || ||||| |||||||| ||  |||| |||||||| |||||  ||||||||||| | |||||||||||||||  |   |||       ||||||  |  |   |||||| | || || | |    ||| ||       |    |   | || ||     ||     | |    
ATTTGTGATGAATGCTATAAAAGCTAAAGAATTCTATCGCCGAGATGTGCAATACATGGTTAGAGATGGGAAGGCTTTGATTATCAATGAGgtaacattttca---aggcatctttatgcttt-caatattatgcactttttttcttttacctatgaaagcaaagaccagcaacatagagacaccaaatccaaaa