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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATACCCACCTATTAATGTTCTTCCATCACTCTCTCGACTAATGAAGgtaagacttttgcagtggagctgcccccttacacatagagagtacctagttgctgattggaaaggtgcatggttttaactttcaaggagttaaaagtaatctttattattggtgatggatttgcag

Basic information

species Vitis vinifera
transcript Vv18s0001g01020.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g01020.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT1G20260.1 (Arabidopsis thaliana), 5'ss of exon 12
ATATACCCACCTATTAATGTTCTTCCATCACTCTCTCGACTAATGAAGgtaagacttttgcagtggagctgccccctta------cacataga---gagtacctagttgctgattggaaaggtgcatggttttaactttcaaggagttaaaagtaatctttattattggtgatggatttgcag
||||||||||| ||||| || ||||||||||| ||||| || |||||||||      ||||| |     |   ||||||      ||||| ||    |  |     || || ||| |     | ||| |||    |||  |  |                                       
ATATACCCACCCATTAACGTGCTTCCATCACTTTCTCGGCTGATGAAGgtag---ccttgcaatttgattatacccttatggattcacatggattgaaacatacgattacttattcgcttaat-cattgttc---cttctacag---------------------------------------

upper sequence: Vv18s0001g01020.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: PP1S425_12V6.1 (Physcomitrella patens), 5'ss of exon 11
ATATACCCACCTATTAATGTTCTTCCATCACTCTCTCGACTAATGAAGgtaagacttttgcagtggagctgcccccttacacatagagagtacctagttgctgattggaaaggtgcatggttttaactttcaaggagttaaaagtaatctttattattggtgatggatttgcag
|| ||||| |||||||||||||| ||||| || |||||||| ||||||||  || |  | ||          |  | |||| ||| |   |  | ||| |  || |||| |  || ||  |  ||     | |    ||    ||| |   | |  ||||              
ATCTACCCGCCTATTAATGTTCTGCCATCTCTGTCTCGACTGATGAAGgtgcga-tcctaca---------tctgcgtaca-atatattct-tcaagtggtagaatggatat-tgtatcatgctaga---cgatattttgtgtgtatttactctacttggatgc----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33402236|gb|CF207863.1|CF207863
EST:     ATATACCCACCTATTAATGTTCTTCCATCACTCTCTCGACTAATGAAG                         AGTGCCATTGGTGAGGGAATGACTCGTCGAGACCATGCTGATGTGTCCA
genomic: ATATACCCACCTATTAATGTTCTTCCATCACTCTCTCGACTAATGAAGgtaagacttt ... ggatttgcagAGTGCCATTGGTGAGGGAATGACTCGTCGAGACCATGCTGATGTGTCCA
EST: gi|37184152|gb|CF603506.1|CF603506
EST:     ATATACCCACCTATTAATGTTCTTCCATCACTCTCTCGACTAATGAAG                         AGTGCCATTGGTGAGGGAATGACTCGTCGAGACCATGCTGATGTGTCCAAC
genomic: ATATACCCACCTATTAATGTTCTTCCATCACTCTCTCGACTAATGAAGgtaagacttt ... ggatttgcagAGTGCCATTGGTGAGGGAATGACTCGTCGAGACCATGCTGATGTGTCCAAC
EST: gi|30128132|gb|CB913471.1|CB913471
EST:     ATATACCCACCTATTAATGTTCTTCCATCACTCTCTCGACTAATGAAG                         AGTGCCATTGGTGAGGGAATGACTCGTCGAGACCATGCTGATGTGTCCAAC
genomic: ATATACCCACCTATTAATGTTCTTCCATCACTCTCTCGACTAATGAAGgtaagacttt ... ggatttgcagAGTGCCATTGGTGAGGGAATGACTCGTCGAGACCATGCTGATGTGTCCAAC
EST: gi|110421897|gb|EC988201.1|EC988201
EST:     ATATACCCACCTATTAATGTTCTTCCATCACTCTCTCGACTAATGAAG                         AGTGCCATTGGTGAGGGAATGACTCGTCGAGACCATGCTGATGTGTCCAAC
genomic: ATATACCCACCTATTAATGTTCTTCCATCACTCTCTCGACTAATGAAGgtaagacttt ... ggatttgcagAGTGCCATTGGTGAGGGAATGACTCGTCGAGACCATGCTGATGTGTCCAAC