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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAAGGATGTCAAGAGCAGAGCACGTCAAAGCAGCTTCTTCAGAAGAATATTTTCGCAACAGTGATTGGCTCAGTACAAAGGgtaggcatcgatcaattgaatgccggcataatgtgtagttaccttgcattgttgtaatataaacatcaaggtacatgcttctaataagttatttcaaatgtaatctttcag

Basic information

species Vitis vinifera
transcript Vv17s0000g10260.t01
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110426615|gb|EC993029.1|EC993029
EST:     AGCTTCTTCAGAAGAATATTTTCGCAACAGTGATTGGCTCAGTACAAAGG                         GGTTGGAGAAAGAGGCCACTGTAGACAAAGCTACAGTACTCAGGGAGTGTA
genomic: AGCTTCTTCAGAAGAATATTTTCGCAACAGTGATTGGCTCAGTACAAAGGgtaggcatcg ... aatctttcagGGTTGGAGAAAGAGGCCACTGTAGACAAAGCTACAGTACTCAGGGAGTGTA
EST: gi|34231997|gb|CF369043.1|CF369043
EST:     AGCTTCTTCAGAAGAATATTTTCGCAACAGTGATTGGCTCAGTACAAAGG                         GGTTGGAGAAAGAGGCCACTGTAGACAAAGCTACAGTACTCAGGGAGTGTA
genomic: AGCTTCTTCAGAAGAATATTTTCGCAACAGTGATTGGCTCAGTACAAAGGgtaggcatcg ... aatctttcagGGTTGGAGAAAGAGGCCACTGTAGACAAAGCTACAGTACTCAGGGAGTGTA