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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAATGAGAGCTGGGAGTTATAGTGGAGGAATGAAACGCCGCCTTAGTGTTGCTATAGCACTAATTGGTGATCCAAAGTTGGTCATTATGGATGAACCGgtatgcagactagagacttctcctttctgcatgtttctttaatgtatttgtttcatacgaggtttcttttgatttgtag

Basic information

species Vitis vinifera
transcript Vv17s0000g05850.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g05850.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os08g30740.1 (Oryza sativa), 5'ss of exon 12
CAAAATGAGAGCTGGGAGTTATAGTGGAGGAATGAAACGCCGCCTTAGTGTTGCTATAGCACTAATTGGTGATCCAAAGTTGGTCATTATGGATGAACCGgtatg------cagactagagactt-ctcctttctgcatgtttctt-taatgtatttgtttcatacgaggtttcttttgatttgtag
 ||  | ||||| || || || ||||| |||||||||||||| || |||||||| ||||| ||||||||||||||||| |||||| || | ||||||||||||        || | | |  ||   || | |||   |  |  ||| | ||||  |  | | | |  | || | |  |     |   
TAATGTTAGAGCAGGTAGCTACAGTGGGGGAATGAAACGCCGGCTAAGTGTTGCAATAGCTCTAATTGGTGATCCAAAATTGGTCTTTCTTGATGAACCGgtaaagaccgccaaatttgctacaaacttccttccaaacatcccttatcatgtgctgatctaaca--atgtatatcctacacag---

upper sequence: Vv17s0000g05850.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G142249_T01 (Zea mays), 5'ss of exon 12
CAAAATGAGAGCTGGGAGTTATAGTGGAGGAATGAAACGCCGCCTTAGTGTTGCTATAGCACTAATTGGTGATCCAAAGTTGGTCATTATGGATGAACCGgtatgcagact--agagacttctcctttctgcatgtt----tctttaatgtatttgtttcatacgaggtttcttttgatttgtag---------
 ||     |||| || || || || ||||||||||| ||||| || |||||||| || ||||| |||||||| ||||| |||||  || | |||||||| ||  | | |    | | | |||    || ||    ||    ||  |  ||    |||  ||||  |  | |   |  || | ||          
TAATGCTCGAGCAGGCAGCTACAGCGGAGGAATGAAGCGCCGGCTAAGTGTTGCGATCGCACTGATTGGTGACCCAAAATTGGTTTTTCTCGATGAACCTgtgaggaaatagaaaaaatttcattgttttgttccttagactcccttgtggccctgtcacatatcaa-tctaactaaatgtatatgctttgtag

upper sequence: Vv17s0000g05850.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA06G20360.2 (Glycine max), 5'ss of exon 12
CAAAATGAGAGCTGGGAGTTATAGTGGAGGAATGAAACGCCGCCTTAGTGTTGCTATAGCACTAATTGGTGATCCAAAGTTGGTCATTATGGATGAACCGgtatgcagactag-agacttctcctttctgcatgtttctttaatgtatttgtttcatacgaggtttcttttgatttg-tag
|||| |||||||||| ||||| || ||||||||||||||||| || |||||||| || || || |||||||| || ||||| |||||| |||||||||||||||||| |  || | | | ||    |    || ||   || |  |  ||     ||      ||  |||| ||||  |||
CAAAGTGAGAGCTGGAAGTTACAGCGGAGGAATGAAACGCCGTCTCAGTGTTGCAATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCGgtatgcaaagcagtatattcctttcatgaatatattctgttgacatgattacaagattaatctttcattttaatttcctag

upper sequence: Vv17s0000g05850.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA04G34140.1 (Glycine max), 5'ss of exon 12
CAAAATGAGAGCTGGGAGTTATAGTGGAGGAATGAAACGCCGCCTTAGTGTTGCTATAGCACTAATTGGTGATCCAAAGTTGGTCATTATGGATGAACCGgtatgcagactag-agacttctcctttctgcatgtttctttaatgtatttgtttcatacgaggtttcttttgatttg-tag
|||| |||||||||| ||||| |||||||||||||||||||| || ||| ||||||| || || |||||||| || ||||| |||||| ||||||| |||||||||| |  || | | | ||    |    || ||   || |  |  ||     ||      ||  |||| ||||  |||
CAAAGTGAGAGCTGGAAGTTACAGTGGAGGAATGAAACGCCGTCTCAGTTTTGCTATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAGCCGgtatgcaaagcagtatattcctttcatgcatattttctgttgacatgattacaagattaatctttcattttaatttcctag

upper sequence: Vv17s0000g05850.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT5G61730.1 (Arabidopsis thaliana), 5'ss of exon 12
CAAAATGAGAGCTGGGAGTTATAGTGGAGGAATGAAACGCCGCCTTAGTGTTGCTATAGCACTAATTGGTGATCCAAAGTTGGTCATTATGGATGAACCGgtatgcagactagag-acttctcctttctgcatgtttctttaatgtatttgtttcatacgaggtttcttttgatttgtag---------------------------------
 ||||| ||||| || ||||| ||||| ||||||||||| || || |||||||| |||||||| ||||||||||| ||| ||||  || | ||||||||||| || |   |  |  | | |||  || |   | |||||||  | | ||  ||| | |   |  ||  | | |     |                                  
GAAAATTAGAGCAGGAAGTTACAGTGGTGGAATGAAACGTCGGCTGAGTGTTGCAATAGCACTCATTGGTGATCCCAAGCTGGTTTTTCTAGATGAACCGgtctgtaatatgcaacattcctctcttttttttttttctttttttttttaattttaaaaatgagtttatataaacatcaaatttttttttattctaacatttgtggattctag

upper sequence: Vv17s0000g05850.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT3G47730.1 (Arabidopsis thaliana), 5'ss of exon 12
CAAAATGAGAGCTGGGAGTTATAGTGGAGGAATGAAACGCCGCCTTAGTGTTGCTATAGCACTAATTGGTGATCCAAAGTTGGTCATTATGGATGAACCGgtatgcagactagagacttctcctttctgcatgttt--ctttaatgtatttgtttcatacgaggtttcttt---tgatttgtag
 ||||| || || || ||||| ||||||||||||||||| || || ||||||||  |  | || ||||||||||||||| ||||| |  |||| ||||| ||||| |   |  |  ||  |  | | |   | |||   |      |  || | |||| ||   ||    |   ||  ||  ||
GAAAATCAGGGCAGGAAGTTACAGTGGAGGAATGAAACGGCGACTCAGTGTTGCAGTTTCTCTCATTGGTGATCCAAAGCTGGTCTTCCTGGACGAACCTgtatgtaacatttattctgttgatgtttatttatttaagtccctcttccttttctcatgcgtacttgtcatacatgggttacag